Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0738 ATGGATGATGGTGGTGGCAACCCTCCTCCTTTTCCTTTTATACAAGGCCCATACTATTCTATGTTATCATCATCCTCAGCGTCATCAACGCCAACTACTAGTCCAACTCCAACCTCTTCGTCATCTGCTTCACTTCCCGCCTCCGGGCGTTACCGGGGGACACGGCCCCGGAGCGGGAAATGGGTGTCAGAGATAAGGGAGCCGCGTAAGACGAAGCGCATTTGGCTTGGGACATACCCAACACCAGAGATGGCCGCAACTGCATACGATGTGGCGGCTCTGGCCTTGAAGGGCCCTGATACTCCTCTCAACTTCCCCAACTCTATTCCCTCGTACCCTACTCCTGCCTCATTGTCTGCTGCTGATATCCGCGCCGCCGCTGCTGCCGCTGCTGAGGCTAGGGTCGTGAGGCCACCAGGGACCGGGAGTGGACAAGGTGGTGGAGAAGGGTTGTTGGGGAAGAGGGAGAGGGAGCATCAGCAATACATTGATGAGGATGAGCTGTTGAACATGCCGAATCTGATCGATGACATGGCCAGGGGAATGCAGGTTAGTCCCCCAAGGATGGGGTCCTCCTCCTTCTCTTCCGATGATTCCCCCGGCAGCTCGGATGTGGATAGCCTTTGGAGTTATTATTAA 639 0.5556 MDDGGGNPPPFPFIQGPYYSMLSSSSASSTPTTSPTPTSSSSASLPASGRYRGTRPRSGKWVSEIREPRKTKRIWLGTYPTPEMAATAYDVAALALKGPDTPLNFPNSIPSYPTPASLSAADIRAAAAAAAEARVVRPPGTGSGQGGGEGLLGKREREHQQYIDEDELLNMPNLIDDMARGMQVSPPRMGSSSFSSDDSPGSSDVDSLWSYY* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0738 212 ProSiteProfiles AP2/ERF domain profile. 50 106 IPR001471 GO:0003700|GO:0006355
Dod06g0738 212 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Dod06g0738 212 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Dod06g0738 212 MobiDBLite consensus disorder prediction 186 212 - -
Dod06g0738 212 MobiDBLite consensus disorder prediction 1 65 - -
Dod06g0738 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 211 - -
Dod06g0738 212 MobiDBLite consensus disorder prediction 18 48 - -
Dod06g0738 212 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677
Dod06g0738 212 SMART rav1_2 50 112 IPR001471 GO:0003700|GO:0006355
Dod06g0738 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF027-LIKE 8 211 - -
Dod06g0738 212 MobiDBLite consensus disorder prediction 151 165 - -
Dod06g0738 212 Pfam AP2 domain 55 98 IPR001471 GO:0003700|GO:0006355
Dod06g0738 212 MobiDBLite consensus disorder prediction 134 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0738 Dod-Chr6 8970356 8971782 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0738 51 211 AP2-EREBP Transcription Factor Family AT5G52020 55.172 1.81e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod06g0738 AP2 1.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0738 - - var:108325547 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0738 06 8970356 8971782 Dod06g0738 06 8970356 8971782 ECH