LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod06g0718	ATGGGAAGAGGGAGGGTGGTACTGGAGAGAATACAGAACAAGATCAACCGGCAAGTAACCTTCTCAAAGCGCAGGAGCGGTTTGCTGAAGAAAGCATTCGAGTTATCTGTGCTATGCGATGCTGAAGTCGCCCTTATCATCTTCTCTAGCCGTGGCAAGCTTTTCCAGTACAGTAGCACTGACATTAACAGGATTATTGACAAGTACCGTCAATGTTGCTTCAACATGTCACAGACTAGAGAGTTAGGTGAACTTCATCAGTCGTCACAGGCCTTGTACGAGGAGCTTTTGAAATTAAAAGCCAAACATGAAACTCTCGAGCGAACACAAAGGAATTTTCTAGGAGAAGAACTTGAGCCACTTAGCTTGAAAGAACTGGAAAGTCTAGAGAAACAACTGGACGCAACGCTTGCACAAACGCGACAGCAACAAATGCAGAAGCTAATGGCACGGCTTGACGAAGTACGTGATCAGGTTCACCAACTGGAGGAGGTCAACATAGAATTGAAATCCAAGGAAAGAGATATGTACACCCAGACCTGTGAAGCTTCTAACGATTCGCCCCCGTTTGACTACGGCAACAACCATCTTAGGTTGCACGATGCACAAACCAATCAGTTTGAATCTGGGACAACCTTGCAAACAGGATGGTTTCCGCACGAGCAAGCGGCAGCATCAAAAGGAGAAGCGAGTGGCACACAGACTGAGTTAGGCCTTAGCAGCAGTCATAGCAAGAGCAATGGATGGCTGCTTTGA	756	0.4669	MGRGRVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSTDINRIIDKYRQCCFNMSQTRELGELHQSSQALYEELLKLKAKHETLERTQRNFLGEELEPLSLKELESLEKQLDATLAQTRQQQMQKLMARLDEVRDQVHQLEEVNIELKSKERDMYTQTCEASNDSPPFDYGNNHLRLHDAQTNQFESGTTLQTGWFPHEQAAASKGEASGTQTELGLSSSHSKSNGWLL*	252

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod06g0718	251	Coils	Coil	89	109	-	-
	Dod06g0718	251	MobiDBLite	consensus disorder prediction	222	251	-	-
	Dod06g0718	251	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Dod06g0718	251	MobiDBLite	consensus disorder prediction	227	251	-	-
	Dod06g0718	251	PANTHER	MADS BOX PROTEIN	1	235	-	-
	Dod06g0718	251	PANTHER	MADS-BOX TRANSCRIPTION FACTOR	1	235	-	-
	Dod06g0718	251	SUPERFAMILY	SRF-like	2	74	IPR036879	GO:0003677\|GO:0046983
	Dod06g0718	251	Coils	Coil	123	175	-	-
	Dod06g0718	251	ProSiteProfiles	K-box domain profile.	89	179	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Dod06g0718	251	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Dod06g0718	251	CDD	MADS_MEF2_like	2	72	IPR033896	GO:0000977\|GO:0045944
	Dod06g0718	251	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Dod06g0718	251	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Dod06g0718	251	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Dod06g0718	251	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Dod06g0718	251	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Dod06g0718	251	Pfam	K-box region	87	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Dod06g0718	251	Gene3D	-	13	91	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod06g0718	Dod-Chr6	8691009	8700632	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod06g0718	1	232	MADS-box Gene Family	AT2G45650	43.200	1.97e-58	184

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Dod06g0718		K-box	6.1e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod06g0718	K09264		-	gmx:100778860	271.937

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod06g0718	06	8691009	8700632	Dod02g3124	02	66039433	66046871	PCT