Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0673 ATGGATCCTCTTGGTCGAGTGAAGAAGGAGTATCTGGGAGAAAGCTCATCCTATTCTGGTGGCCTTGAGCAATATTCAATGGATGCTGCTCCTCCGCAACCACAACCAATGGAGGGGCTTCATGAAAGTGGTCCTCCACCATTCCTCACGAAAACATATGACATCATTGATGACCCTTCCACGAATCACATAGTTTCCTGGAGCAAAGGGAACAACAGCTTCGTTGTGTGGGATCCACAGGCTTTCTCTATTAGTCTTCTCCCCAGATTCTTCAAGCACAACAATTTCTCTAGCTTTGTCAGGCAACTCAACACCTATGGGTTTAAAAAGGTTGATCCAGAAAGGTGGGAGTTTGCTAATGAGATGTTTCTTAGAGGGCAAAGGGTTCTCTTGAAGAACATTAAAAGGAGGAAGGCACATCCACCTCAGGCTCTACAGCAAGCTTTAGAGTCTTGTGTTGAAGTGGGGCGGTTTGGACTAGATGGAGAAGTTGACCGGTTGAGGCGTGACAGGCAAGTTCTCATGGTGGAGTTGGTGAAACTGAGGCAACAGCAACAGAATACAAGGGCTTACATTCAAGCAATGAAAGGTAGGCTTAGAAGGACTGAACAGAAGCAGCAGCAAATGATGAACTTCTTGGCAAGGGCAATGCAGAATCCAAATTTTGTGCAACAATTAGTCCAACAAAAGGGGTGGAGGAAGGAGCTGGAGGAAGCTTTCTCTAATAAGAGGATGCGACCTATTGACCAAGGCCCTAGAAATGTTGTTGAAGTAGGTGAATTAGGTTGTGCCGATCAAGATTGCTCAGCTTTTGTTAAACTGGACTTGCAGGAACACACTGAGAGATTAGATTTTGAGGTATCAGATATGGACCTTGCTTTGAATATGGAGGGACAACAAAGTGGGAGCCAAAAGAGCCTAGAGGAGGACCATGCTCATCAACTTGGAAGTAGTAGAGGTAAAGAAATTGATGAAATTTGGCAAGATTTGTTCAATGAGGATATTGAAGATGAAGGTGTGCTAGGTGTTGAAGATGTGCATGTGTTGGCTGAGCAACTTGGTTATTTAGCCTCTAGTCCTAAATAG 1086 0.4457 MDPLGRVKKEYLGESSSYSGGLEQYSMDAAPPQPQPMEGLHESGPPPFLTKTYDIIDDPSTNHIVSWSKGNNSFVVWDPQAFSISLLPRFFKHNNFSSFVRQLNTYGFKKVDPERWEFANEMFLRGQRVLLKNIKRRKAHPPQALQQALESCVEVGRFGLDGEVDRLRRDRQVLMVELVKLRQQQQNTRAYIQAMKGRLRRTEQKQQQMMNFLARAMQNPNFVQQLVQQKGWRKELEEAFSNKRMRPIDQGPRNVVEVGELGCADQDCSAFVKLDLQEHTERLDFEVSDMDLALNMEGQQSGSQKSLEEDHAHQLGSSRGKEIDEIWQDLFNEDIEDEGVLGVEDVHVLAEQLGYLASSPK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0673 361 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod06g0673 361 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod06g0673 361 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod06g0673 361 Coils Coil 164 184 - -
Dod06g0673 361 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod06g0673 361 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod06g0673 361 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod06g0673 361 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 15 341 - -
Dod06g0673 361 MobiDBLite consensus disorder prediction 298 320 - -
Dod06g0673 361 MobiDBLite consensus disorder prediction 1 43 - -
Dod06g0673 361 SUPERFAMILY "Winged helix" DNA-binding domain 43 137 IPR036390 -
Dod06g0673 361 MobiDBLite consensus disorder prediction 304 320 - -
Dod06g0673 361 Gene3D - 40 138 IPR036388 -
Dod06g0673 361 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 341 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0673 Dod-Chr6 8162399 8164157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0673 34 359 HSF AT3G22830 55.866 1.40e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dod06g0673 HSF_DNA-bind 1.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0673 K09419 - gmx:100809515 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0673 06 8162399 8164157 Dod06g0673 06 8162399 8164157 ECH