Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0659 ATGGCGGTTGGCAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGGCCGCTGATCCCTTTGCTAAGAAGGATTGGTATGACATTAAGGCCCCATCTGTGTTCCAGGTCAAAAACGTTGGCAAGACCCTTGTCACTCGTACTCAGGGTACCAAGATTGCTTCAGAAGGGCTCAAACATCGAGTGTTTGAGATCTCACTGGCTGATCTCCAAGGGGATGAGGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTCTGACCAATTTCTGGGGAATGGATTTCACAACTGACAAGCTGAGGTCATTGGTGCGGAAATGGCAAACTCTTATTGAAGCCCATGTGGATGTGAAGACAACTGATAATTACACTTTGAGGATGTTTTGCATTGGATTTACCAAGAGGAGATTTAACCAGATGAAGAGAACCTGTTATGCACAATCAAGCCAGATCAGACAGATCCGCAGGAAGATGAGAGAAATCATGACCAACCAGGCAACATCCTGTGATTTGAAGGAGTTGGTCCGCAAGTTCATTCCAGAGATGATTGGAAAGGAAATTGAGAAAGCAACACACAGCATTTATCCTCTGCAGAATGTGTTCATTAGAAAAGTCAAGATCCTGAAAGCTCCTAAGTTTGATCTTGGAAAACTGATGGAGGTCCATGGTGATTACTCAGAAGATGTCGGTACAAAGGTAGACAGACCTGCTGATGAAACAATGGGAGAGGCAACCCCTGAAGTTGTTGGCGCTTGA 786 0.4517 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVTRTQGTKIASEGLKHRVFEISLADLQGDEDHAFRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRFNQMKRTCYAQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEMIGKEIEKATHSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVDRPADETMGEATPEVVGA* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0659 261 Pfam Ribosomal S3Ae family 16 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Dod06g0659 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Dod06g0659 261 MobiDBLite consensus disorder prediction 1 20 - -
Dod06g0659 261 SMART Ribosomal_S3Ae_2 15 221 IPR001593 GO:0003735|GO:0005840|GO:0006412
Dod06g0659 261 MobiDBLite consensus disorder prediction 1 15 - -
Dod06g0659 261 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Dod06g0659 261 MobiDBLite consensus disorder prediction 240 261 - -
Dod06g0659 261 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 261 - -
Dod06g0659 261 Hamap 40S ribosomal protein S1 [RPS3A]. 1 258 IPR027500 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0659 Dod-Chr6 8008892 8011644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0659 1 261 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 85.115 1.14e-161 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0659 K02984 - gmx:100805519 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0659 06 8008892 8011644 Dod06g0659 06 8008892 8011644 ECH