Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0598 ATGGAGCTTCAGAAGCGCCAAGATCAAAGCCTCTCCGAGAGGAAAGGCCAGAAGCGCAAGCTCGACCACCAGCTCCACGACCACCGCCAGATCTTCGCCCCGCCGCCCACCGCCGACGAGCTCGCCGCTATCCTCGCCCAAGTCTCCGATCAGGTGCGCATCCTCCACTCCACCTTCACATGGAAAGAAGCCGATCGAGCCGCCGCCAAGCGCGCCACTCACGCGCTCGCCGATCTCGCCAAGAACGAGGAAGTGGTGAACGTGATTGTTGACGGAGGCGCGGTTCCAGCTTTGGTTAAGCATCTTCAGGCGCCGCCTCCCGACGACGATGAACGTGTTCAGAAGCCGTTGCCGTTTGAGCACGAGGTTGAGAAAGGAAGCGCTTTCGCACTAGGACTTCTTGCCGTGAAGCCAGAACATCAACAGCTCATTGTTGATAGTGGTGCCTTAACACATCTTGTTGATCTTTTGAAGAGGCATAAGAATGGCTTAACTTCTCGTGCCATTAATAGTCTGATTCGTAGGGCTGCAGATGCCATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACCCGTGTCAGGGTGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCTGATCCAAAAGTACAACGAGCAGCTGCTGGTGCACTGCGAACCCTGGCTTTCAAAAATGATGGAAATAAAATTCAGATTGTTGAATGCAATGCTCTTCCGACTCTGATTCTAATGCTTCGCTCTGAAGATGCAGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTGGTCCATTCTTCCCCTATTATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTGCAACCAGTTATTGGATTGCTTAGCTCCTGCTGCCCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGTCAGTTTGCAGCAGCTGATTCAGACTGTAAGGTTCACATTGTACAGAGGGGTGCTGTTCAGCCTTTGGTAGAGATGCTTCAGTCTCCTGACGTACAACTCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCTCAGGATACACATAACCAAGCCGGTATTGCTCACAGTGGTGGCTTACTACAATTGCTTAAGCTTCTTGACTCAAAAGATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTTGGTGGAGTTCAGAGACTGCAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCAAAGACTTTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTGTTGAACCATTTGTTATATGTTATGCAAGTTTCAGAAAAGGGTTTTCAAAGGCGTGTTGCTTTGGCTTTTGCACATCTTTGTTCAGCAGATGATCAGAGAAGAATTTTTATTGATCACCATGGTCTTGAGTTGCTTGTTGGGCTTCTTGGCTCGTCTAGCTCAAAACAGCAACTTGAAGGTGCTGTAGCTTTATGCAAGTTGGCCAACAAAGCCTCGACTTTGTCTCCTGTAGATGCTGCTCCGCCTTCTCCAACACCACAGGTATATTTAGGAGAGCAGTATGTAAACAATGTTACATTGTCAGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCACAGAATTTGTCTATTAGCATCTTCAGATGCATTTCTTGCAATGTTTGACGGTGGTTACAGGGAGAAGGATGCAAGAGACATAGAAATTCCAAATATTAGATGGGAAGTTTTTGAGCTGATGATGAGATTTATATATACTGGATCAGTTGATGTTACTCCGGATATTGCTCAGGATCTTCTCCGAGCAGCTGATCAGTATCTTTTAGAAGGGCTCAAGAGACTCTGTGAATACACAATTGCACGGGATATATCACTCGAGAATGTATCAAGTATGTATGAACTTTCAGAAGCATTTAATGCAATATCTTTGAGGCGCACATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAAGCCAGGGCACTCTCTTAAGATTCAGCGTATAATACCAGAGATACGCAGTTACTTCGTTGAAGTTCTTTCAAAGGCCAATTCCCATAACATTCGACTGTAG 2127 0.4537 MELQKRQDQSLSERKGQKRKLDHQLHDHRQIFAPPPTADELAAILAQVSDQVRILHSTFTWKEADRAAAKRATHALADLAKNEEVVNVIVDGGAVPALVKHLQAPPPDDDERVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRVEGGIPPLVHLLEFADPKVQRAAAGALRTLAFKNDGNKIQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPIIKKEVLLAGALQPVIGLLSSCCPESQREAALLLGQFAAADSDCKVHIVQRGAVQPLVEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHSGGLLQLLKLLDSKDGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYVMQVSEKGFQRRVALAFAHLCSADDQRRIFIDHHGLELLVGLLGSSSSKQQLEGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNNVTLSDVTFLVEGKRFYAHRICLLASSDAFLAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTPDIAQDLLRAADQYLLEGLKRLCEYTIARDISLENVSSMYELSEAFNAISLRRTCILFILEQFDKLSAKPGHSLKIQRIIPEIRSYFVEVLSKANSHNIRL* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0598 708 SMART arm_5 82 136 IPR000225 GO:0005515
Dod06g0598 708 SMART arm_5 354 394 IPR000225 GO:0005515
Dod06g0598 708 SMART arm_5 137 185 IPR000225 GO:0005515
Dod06g0598 708 SMART arm_5 270 311 IPR000225 GO:0005515
Dod06g0598 708 SMART arm_5 313 353 IPR000225 GO:0005515
Dod06g0598 708 SMART arm_5 469 509 IPR000225 GO:0005515
Dod06g0598 708 SMART arm_5 229 269 IPR000225 GO:0005515
Dod06g0598 708 SMART arm_5 187 227 IPR000225 GO:0005515
Dod06g0598 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 703 IPR044282 -
Dod06g0598 708 ProSiteProfiles BTB domain profile. 541 608 IPR000210 GO:0005515
Dod06g0598 708 Gene3D Potassium Channel Kv1.1; Chain A 532 676 IPR011333 -
Dod06g0598 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 366 IPR000225 GO:0005515
Dod06g0598 708 SUPERFAMILY ARM repeat 439 509 IPR016024 -
Dod06g0598 708 Gene3D - 29 168 IPR011989 -
Dod06g0598 708 CDD BTB_POZ_ARIA_plant 528 643 - -
Dod06g0598 708 Pfam BTB/POZ domain 535 634 IPR000210 GO:0005515
Dod06g0598 708 SMART BTB_4 541 638 IPR000210 GO:0005515
Dod06g0598 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 149 IPR000225 GO:0005515
Dod06g0598 708 MobiDBLite consensus disorder prediction 1 24 - -
Dod06g0598 708 Pfam Armadillo/beta-catenin-like repeat 229 268 IPR000225 GO:0005515
Dod06g0598 708 Pfam Armadillo/beta-catenin-like repeat 313 352 IPR000225 GO:0005515
Dod06g0598 708 Pfam Armadillo/beta-catenin-like repeat 194 226 IPR000225 GO:0005515
Dod06g0598 708 SUPERFAMILY POZ domain 533 635 IPR011333 -
Dod06g0598 708 SUPERFAMILY ARM repeat 61 413 IPR016024 -
Dod06g0598 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
Dod06g0598 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 267 IPR000225 GO:0005515
Dod06g0598 708 Gene3D - 169 274 IPR011989 -
Dod06g0598 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 148 198 IPR000225 GO:0005515
Dod06g0598 708 Gene3D - 275 519 IPR011989 -
Dod06g0598 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 233 IPR000225 GO:0005515
Dod06g0598 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0598 Dod-Chr6 7305901 7314194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0598 291 511 U-box Gene Family AT2G23140 25.652 6.34e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dod06g0598 BTB 7.1e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0598 - - gmx:100784348 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0598 06 7305901 7314194 Dod06g0598 06 7305901 7314194 ECH
Dod02g1347 02 16141841 16149024 Dod06g0598 06 7305901 7314194 PCT