LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod06g0597	ATGCTGCACTACAAAATCTCTGCAAGTGCTTATGTTTTCTTAATTTGCTTCACAGTGAGTGTTACACTAATAATCACTCCTACAGAAGCAGCTACTGATGAGTCCTATATGAGCCATTACTGTCCAAACACAAGCACTTATGCTCCCAACACCACCTACCAAGCCAACCTCAATCGACTCCTTTCATGGCTCTCATCAAACTCCTCCACACGCAAAAACGGTTACTACAACGCCACAATCGGCGCCAACATCCCCAGCGACAGCCATCTACGGTGCCTTTCTCTGCCGTGGAGATCTCACCACCAACGCTTGCCAAGACTGTGTTTCCACTGCAGCAGGAAAAGAGTGCTCCAAAAGTGTCCCAAAGAGAAGGAGGCAGTGATTTGGTTCGCCGAGTGCATGGTGCGTTACTCGGACCAGTACTTCTTCACCATATCTGCCGAAGAGCCTGTGGTTCCTATGTATAACGAGGCCAATGTATCGGATCAAAACAGCTTCATGAACCTCTTGCCTGAGATCATGAACACGGCGGCGGACCAGGCGATGAAGGGTGGTGCTGACAAGAAGTTTGGTACAAAGGAAGCAAACTTTTCGAGCTTCCAAACTTTGTACACGCTGGCACAGTGTACCCCTGATTTGACACAGCTTGGCTGCCAAAAATGCCTCCAAATTGCAATTGGACAATTACCTTCGTGCTGTGGTGGAAAGCAAGGAGCAAGAGTGCTGATTCCAAGTTGTAATATTAGGTATGAGTTGTACCCGTTTTACCAGCAGGTGGATGGGTCTGTGCCCACCCCACCACAGCCACCGCGGCCAAACTCAAAAGATCAATCAGGGATATCAACGATGGTAATCATTGCAATTGTGGCTCCAATTGTGTCTGTTTTGCTGGTTACCTTCACTGCTTTCTGGATTATATCTAGAAGGGCAAGAAGAAAGAAGTACAGTTCTGTGCCACTGCCAGATGAAAGTGCAGTTCAAATTTCCAGCACGGAGTTCATGCAATTTGATTTTGAAACAATCAAAGAATCCACAAACAACTTCCGTGATGAGAATAAATTAGGGGAAGGAGGATTCGGTTCAGTTTATAAGGGTACACTGCCTAATGGACAAAATGTTGCTGTGAAGAGGCTATCAAGAAACTCTAGTCAAGGAGTAGATGAATTCAAAAATGAGGTGTTTTTGGTAGCCAAACTCCAACATAGAAATTTAGTTAGACTATTGGGGTTTTGTTTAGATGGAGAAGAAAAGATGCTCATCTATGAATATGTTCCAAACAAAAGCCTAGACCATTTCCTATTTGATCCTAACAAACAACAACAGTTGAATTGGACAAAACGATACAAGATAATAGAAGGGATTGCTCGATGGATACTTTATCTTCATGAAGATTCTCGACTTACAATCATACATCGAGATCTTAAAGCTAGTAATGTATTACTAGATGAGAATTTAAATCCAAAGATTTCAGATTTTGGGATGGCAAGGATTTTTGGCAATGATCAAACTCAAGGAAACACAAACAGAGTTGTTGGAACACTTGGATACATGTCTCCAGAATATGCAATGCGTGGACACTTTTCTGTCAAAGTGGATGTGTATAGTTTTGGTGTTCTTGTTCTAGAGATAATAAGTGGGAAGAAGATAACATCCTTCTTTGAATCAAGCTATGGTGGAGACCTCCTAAATTATGCTTGGAAACATTGGAGAGATGGAACTCCATTGGAGATATTGGACATGACATTAAGAGATTCATATTTAAGGGCTGAAGTGAATAGATGCATCCATATTGGATTATCTTGTGTTCAGGAAGATCCAACAAAACGGCCAACAATGCAGACCATAATTCTAATGCTAAACAGCCATTCAGTTACTCTTTCAGCTCCTGAACAGCCTGCGGGTTATATTCCTAGCAAAACTCAGCCGAGTTTCCCAACAAAGGAGCCGGAGAGCTCAGATAAGTCTACAAGCAAATCAGTCTCAATGTCTGCTCCATCTGTTGATGAATCATCCATCACTGGCGTGTACCCTCGATAA	2037	0.4276	MLHYKISASAYVFLICFTVSVTLIITPTEAATDESYMSHYCPNTSTYAPNTTYQANLNRLLSWLSSNSSTRKNGYYNATIGANIPSDSHLRCLSLPWRSHHQRLPRLCFHCSRKRVLQKCPKEKEAVIWFAECMVRYSDQYFFTISAEEPVVPMYNEANVSDQNSFMNLLPEIMNTAADQAMKGGADKKFGTKEANFSSFQTLYTLAQCTPDLTQLGCQKCLQIAIGQLPSCCGGKQGARVLIPSCNIRYELYPFYQQVDGSVPTPPQPPRPNSKDQSGISTMVIIAIVAPIVSVLLVTFTAFWIISRRARRKKYSSVPLPDESAVQISSTEFMQFDFETIKESTNNFRDENKLGEGGFGSVYKGTLPNGQNVAVKRLSRNSSQGVDEFKNEVFLVAKLQHRNLVRLLGFCLDGEEKMLIYEYVPNKSLDHFLFDPNKQQQLNWTKRYKIIEGIARWILYLHEDSRLTIIHRDLKASNVLLDENLNPKISDFGMARIFGNDQTQGNTNRVVGTLGYMSPEYAMRGHFSVKVDVYSFGVLVLEIISGKKITSFFESSYGGDLLNYAWKHWRDGTPLEILDMTLRDSYLRAEVNRCIHIGLSCVQEDPTKRPTMQTIILMLNSHSVTLSAPEQPAGYIPSKTQPSFPTKEPESSDKSTSKSVSMSAPSVDESSITGVYPR*	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod06g0597	678	MobiDBLite	consensus disorder prediction	630	670	-	-
	Dod06g0597	678	ProSiteProfiles	Protein kinase domain profile.	348	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod06g0597	678	ProSitePatterns	Protein kinases ATP-binding region signature.	354	376	IPR017441	GO:0005524
	Dod06g0597	678	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	6	656	-	-
	Dod06g0597	678	MobiDBLite	consensus disorder prediction	630	678	-	-
	Dod06g0597	678	Pfam	Salt stress response/antifungal	160	253	IPR002902	-
	Dod06g0597	678	Pfam	Salt stress response/antifungal	41	139	IPR002902	-
	Dod06g0597	678	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	6	656	-	-
	Dod06g0597	678	Gene3D	-	33	142	IPR038408	-
	Dod06g0597	678	Gene3D	-	149	255	IPR038408	-
	Dod06g0597	678	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Dod06g0597	678	SMART	serkin_6	348	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod06g0597	678	Gene3D	Phosphorylase Kinase; domain 1	310	423	-	-
	Dod06g0597	678	Pfam	Protein tyrosine and serine/threonine kinase	351	617	IPR001245	GO:0004672\|GO:0006468
	Dod06g0597	678	ProSiteProfiles	Gnk2-homologous domain profile.	148	255	IPR002902	-
	Dod06g0597	678	ProSiteProfiles	Gnk2-homologous domain profile.	35	142	IPR002902	-
	Dod06g0597	678	SUPERFAMILY	Protein kinase-like (PK-like)	332	640	IPR011009	-
	Dod06g0597	678	Gene3D	Transferase(Phosphotransferase) domain 1	424	631	-	-
	Dod06g0597	678	CDD	STKc_IRAK	354	620	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod06g0597	Dod-Chr6	7221289	7238901	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod06g0597	16	678	Receptor kinase-like Gene Family	AT4G05200	48.605	0.0	633

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dod06g0597		PK_Tyr_Ser-Thr	5.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod06g0597	-		-	csin:114306417	699.508