Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0588 ATGCCTGAGAGATTATCAAGATTAGAAGAGGAGGAAAAAAATCATATAGAGACTAGAAAAAGGAAATTTTTTGCAGAAATACTTAATACTGTCCGTGAGTTTCAATTACAAGTTCAGGCTTCTGTGAAGCGGAGAAAACAGAGGAATGATGGTATCCAGGCTTGGCATGGAAGACAAAGACAACGGGCAACACGGGCAGAGAAACTGAGATTCCAAGCCTTAAAATCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGCAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACCAACAAACTACTTGTAAATTTAGGAGCTGCAGTTCAACGTCAAAAGGACTCCAAACATTCAGATGGTATTGAACCCTTGGAAGATTCAGAAGTTGATCTACCTGAGTCAGATGCTTCAAAGAATGAAAAGGAATCACCTCTTGACGACGATATGGATGTGATAGATTCTGATAATAATGGTGATACTAGTGATTTACTTGAAGGTCAGAGGCAGTACAATTCTGCCATACATTCGATTCAAGAAAAGGTAACTGAGCAACCATCTATTCTTGAAGGTGGAGAATTAAGACCATATCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAATAACTTGAATGGAATTTTGGCTGATGAGATGGGGCTTGGGAAGACAATACAAACAATTTCATTAGTAGCATATCTTATGGAATACAAGGGTGTGACTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTTCCAAATTGGATGATTGAATTCTCAACATGGGTTCCAAGCATTACTACTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTTAGGGGAGAAGAAATTTAATGTTCTGTTAACACACTATGATCTTATAATGAGAGACAAAGCATTTCTCAAGAAAATTCAATGGCAATACTTGATTGTGGATGAAGGACATCGGTTAAAGAATCATGAATCTGCTCTAGCAAGAACTCTGGATTCTGGCTATCACATCCAACGCAGACTACTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTTCCGAACATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCACCTTTTGCGGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTTTTGATCATTCGGCGTCTACATCAAGTAATAAGGCCTTTCATATTAAGAAGAAAAAAGGATGAGGTGGAAAAATATCTTCCCAGTAAATCTCAGGTCATACTCAAATGTGATATGTCAGCGTGGCAGAAAGTATATTATCAACAAGTCACTGACGTAGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAGAGTCTGCAGAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTATCTATTTGTCGGAGATTATGATGTGTATAATCGTAAGGAAGAGATTGTCAGAGCATCAGGTAAGTTTGAACTGCTTGACCGTTTGCTACCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACATTCTTGAAATTTATCTGCGACTTCATGATTTTAAGTATCTAAGACTTGATGGCTCCACAAAAACTGAGGAAAGAGGCACTCTACTACGAAAATTTAATGCTCCTGACTCCCCTTACTTTATGTTTCTGTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCCCAGATGGATCAACAAGCCGAGGATCGAGCCCATCGCATTGGACAAAAGAAGGAAGTTAGGGTTTTTGTGTTGGTTAGCGTAGGATCAATTGAAGAGGTAATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCGAAAGTTATCCAAGCAGGACTTTTCAACACAACATCAACAGCCCAGGACAGGAGAGAAATGTTAGAGGAGATCATGCGTAGAGGTACAAGCTCACTTGGGACAGATGTACCCAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCGGATGAGGAATTTTGGCTATTTGAGAAAATGGATGAAGAGAGAAGGCAAAAGGAAAATTACAGATCTCGTCTAATGGATGAGCATGAATTGCCAGACTGGGTGTACTCTCCACTTAATAAGGATGATAAATCCAAAGATTTCAGTAGTGCTAGCTCTACAGGGAAGCGAAAAAGGAAAGAAGTTACATATGCAGATACATTAAGTGATCTTCAATGGATGAAGGCTGTGGAGAATGGGGAAGACGTATCGAAGTTTTCGGGTAGAGGGAAAAGAAGAGACCCCCTCTCATCCGACAACGCGGCACAAGCCAGCAATAATTATGCAGCAGAAGAAAGGTCATTAGAATTACGAAGTGAAAGTGTCCCCATGGCGAATGAGAGAACAAGTGAAGATAGTTTGCATTTGACCCCAGCCTCAAAGCGAGTCAAGCATGAAGGGACAAATTCCCACAGATATGCATACGAGGATGTCAGAGGAAGTGGTTTGAACCAGCCTGTGCTATCCTGGAACACTTACAGAAAGAAGAGATCAAGCTATCATGGTCAGGGTTCATCATCATCTGATACCAAAGGGCAGAATTCAAATGGAAGAGCAAACTTGAACTAA 2709 0.4086 MPERLSRLEEEEKNHIETRKRKFFAEILNTVREFQLQVQASVKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKSDDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKHSDGIEPLEDSEVDLPESDASKNEKESPLDDDMDVIDSDNNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILEGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLVAYLMEYKGVTGPHLIVAPKAVLPNWMIEFSTWVPSITTILYDGRLDERKAMKEELLGEKKFNVLLTHYDLIMRDKAFLKKIQWQYLIVDEGHRLKNHESALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPSKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDVYNRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGTLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMDEHELPDWVYSPLNKDDKSKDFSSASSTGKRKRKEVTYADTLSDLQWMKAVENGEDVSKFSGRGKRRDPLSSDNAAQASNNYAAEERSLELRSESVPMANERTSEDSLHLTPASKRVKHEGTNSHRYAYEDVRGSGLNQPVLSWNTYRKKRSSYHGQGSSSSDTKGQNSNGRANLN* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0588 902 MobiDBLite consensus disorder prediction 864 902 - -
Dod06g0588 902 MobiDBLite consensus disorder prediction 115 165 - -
Dod06g0588 902 CDD SF2_C_SNF 498 631 - -
Dod06g0588 902 MobiDBLite consensus disorder prediction 735 761 - -
Dod06g0588 902 Pfam Snf2-ATP coupling, chromatin remodelling complex 714 774 IPR029295 GO:0042393
Dod06g0588 902 Gene3D - 164 420 IPR038718 -
Dod06g0588 902 Pfam SNF2-related domain 199 487 IPR000330 GO:0005524|GO:0140658
Dod06g0588 902 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 374 IPR014001 -
Dod06g0588 902 SMART helicmild6 536 620 IPR001650 -
Dod06g0588 902 PANTHER SNF2/RAD54 HELICASE FAMILY 3 853 - -
Dod06g0588 902 Pfam Helicase conserved C-terminal domain 507 620 IPR001650 -
Dod06g0588 902 Gene3D - 427 727 IPR027417 -
Dod06g0588 902 Coils Coil 711 731 - -
Dod06g0588 902 MobiDBLite consensus disorder prediction 784 902 - -
Dod06g0588 902 SMART ultradead3 192 385 IPR014001 -
Dod06g0588 902 MobiDBLite consensus disorder prediction 834 853 - -
Dod06g0588 902 MobiDBLite consensus disorder prediction 134 148 - -
Dod06g0588 902 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 677 IPR001650 -
Dod06g0588 902 PANTHER ATP-DEPENDENT HELICASE BRM 3 853 - -
Dod06g0588 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 674 IPR027417 -
Dod06g0588 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 421 IPR027417 -
Dod06g0588 902 SMART SnAC_2 713 774 IPR029295 GO:0042393
Dod06g0588 902 MobiDBLite consensus disorder prediction 798 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0588 Dod-Chr6 7133560 7139253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0588 503 648 RAD5 or RAD16-like Gene Family AT5G43530 37.333 2.52e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod06g0588 SNF2_N 3.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0588 - - gmx:100786280 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0588 06 7133560 7139253 Dod06g0588 06 7133560 7139253 ECH