Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0574 ATGGCAGCACAACCACAACCACAGCCACAGCCACAACCAGTCTCACCCTTTGCTCTTCACGGCGTTGACGATTTCTACTTCTCTGCTCTGATTGATGAGGATCAAGCTGATGTTGACCCCATTTCCGATGACAAGTATGCTCAAGAGTTGCAGCTCCAAGAGACCCTCATGTCCTCTGTCATCGCTTCCCAAAACAACAGCAACGGTTCATCATCATCATCATCTTCATCAGCATCACCACCACCACCACCAACATCGTCCATCTTTTGCTTGCCATCATCATCAACACCTTCTTCATCAAAGACCGTTGAGTTCACCCTTATCCCAATCACCAAGCACCTAGATTCCTTGGATGCTGCTGCTGCTGATGATGATGATGAAGAACAACAACAAGGGGATTCATTGTCCAACCATGTCATATGTGAGATTTGTGCAGAAACCAAAGGGTTTGACCAGATGTTCAGGAACAAGGGATGTGACCATTCCTTCTGCTCTGACTGTGTCACCAAGCAGGTGGCCACCAAGATCCAAGAGAGCATAACAGTGGTTGCTTGCCCTGGTTTGAACTGCAGGGGTGTCTTGGAGCTTGATGCTTGCAGGCCTATGCTTCCAAAAGAGGTCCTTGAAAGGTGGGATGAGGCACTCTGTGAGGCCCTTTTTCTTGCGGCTCCAAAGTTCTATTGCCCCTTTAGGGACTGTTCTGCAATGCTGCTTGCTGAAAATGAAGGGGAAAACATTAGTGAGGCTGAGTGCCCCTTTTGTCACAGGCTCTTCTGTGCAAGGTGTTATGTTCCTTGGCACCCTGGGGTTGAGTGTGAGGTGTTCCAGATACTGAATGAGGATGAGAGAGGGAGGGATGATCTCCTTGTTAGGGAGCTTGCCAGTGAGAAGAAATGGAGAAGGTGTCCCCAGTGCAAGTTCTATGTGGAAAAGACTCAAGGGTGTTTGCATATCATCTGCAGGTGCCGATTTGAGTTTTGCTATGCGTGCGGGGAACAGTGGACTCCTACTCATGGGGGCTGCCAGAGAAATTAG 1035 0.4899 MAAQPQPQPQPQPVSPFALHGVDDFYFSALIDEDQADVDPISDDKYAQELQLQETLMSSVIASQNNSNGSSSSSSSSASPPPPPTSSIFCLPSSSTPSSSKTVEFTLIPITKHLDSLDAAAADDDDEEQQQGDSLSNHVICEICAETKGFDQMFRNKGCDHSFCSDCVTKQVATKIQESITVVACPGLNCRGVLELDACRPMLPKEVLERWDEALCEALFLAAPKFYCPFRDCSAMLLAENEGENISEAECPFCHRLFCARCYVPWHPGVECEVFQILNEDERGRDDLLVRELASEKKWRRCPQCKFYVEKTQGCLHIICRCRFEFCYACGEQWTPTHGGCQRN* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0574 344 Pfam IBR domain, a half RING-finger domain 225 272 IPR002867 -
Dod06g0574 344 Pfam IBR domain, a half RING-finger domain 291 341 IPR002867 -
Dod06g0574 344 Gene3D - 269 344 - -
Dod06g0574 344 ProSitePatterns Zinc finger RING-type signature. 159 168 IPR017907 -
Dod06g0574 344 MobiDBLite consensus disorder prediction 57 76 - -
Dod06g0574 344 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 36 333 - -
Dod06g0574 344 ProSiteProfiles TRIAD supradomain profile. 137 344 IPR044066 -
Dod06g0574 344 ProSiteProfiles Zinc finger RING-type profile. 141 186 IPR001841 -
Dod06g0574 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 219 IPR013083 -
Dod06g0574 344 SMART ibrneu5 282 341 IPR002867 -
Dod06g0574 344 SMART ibrneu5 209 272 IPR002867 -
Dod06g0574 344 SUPERFAMILY RING/U-box 137 218 - -
Dod06g0574 344 SUPERFAMILY RING/U-box 283 342 - -
Dod06g0574 344 SUPERFAMILY RING/U-box 213 276 - -
Dod06g0574 344 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 36 333 IPR031127 GO:0004842|GO:0016567
Dod06g0574 344 MobiDBLite consensus disorder prediction 57 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0574 Dod-Chr6 6961991 6963445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0574 141 331 C3H Transcription Factor Family AT2G19610 25.500 7.49e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0574 K11975 - qsu:112001859 372.859