Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0573 ATGACACAACCACCACCACCACTACAACAACAACAACAAAGTTCACCCTTTGGTCTTCACGGCGTTGAAGACTTAAACTTCTCCGCTAATGATCAAGGTGACCTTGTCCTCATCTCTGATGATGACGAATATGCTCAAGAGTTGCAGCTCCAAGAGTTCCTCATGTCCTCTTTCATCACTTCCCAAAACACCATCGAAGGGTCATCATCATCATCATCAAAGGCCGTTCGGTTTACCCTTGTCCCCATCACTAAGCAGGTAGATTACGTGGATGGTGATAAAGAAGAAGAAAAAGAACCAGGGGAATCTTCCTTCTCTTCCCATGTCATATGCGAGATTTGTGCTGAAACCAGAGAGTGTGACCAGATGTTCAGGAACAAGGGATGTGACCATTCCTTCTGCTCTGACTGTGTCACCAAGCAGGTGGCCACCAAGGTCGAAGAGGGCATAACGGTTGTTGGGTGCCCTGGTTTGAACTGCAAGGGTGTCTTGGAGCTTGATGCTTGCAGGCCTATCCTTCCAAAAGAGCTCCTTGATAAGTGGGATAAGGCACTCTGTGAGGATCTTTTTCTTGCGGCCCCAAAGTTGTATTGCCCCTTTAGGGACTGTTCTGCAATGCTGCTGCTGAATGACGATGAAGGGGAAAACATTGGGGAGGCTGAGTGTCCCTCTTGTCACAGGCTCTTCTGTGCAAGGTGTTATGTTCCTTGGCACCCTGGGGTTGAGTGTCAGGTGTTTCAGTCACTGAATGAGGATGAGAGAGGGAGGGAGGATCTCCTTGTCAGGGAGCTTGCTGGTGAGAAGAAATGGAAAAGGTGTCCACGGTGCAAGTTCTACGTGGAAAAGACTCAGGGGTGTTTGCATATCCTCTGCAGGTGTCGATTTGAGTTTTGCTATGCGTGTGGGGAACAGTGGACTCCTAATCATGGTGGCTGCCAGAGAAATTAG 948 0.4873 MTQPPPPLQQQQQSSPFGLHGVEDLNFSANDQGDLVLISDDDEYAQELQLQEFLMSSFITSQNTIEGSSSSSSKAVRFTLVPITKQVDYVDGDKEEEKEPGESSFSSHVICEICAETRECDQMFRNKGCDHSFCSDCVTKQVATKVEEGITVVGCPGLNCKGVLELDACRPILPKELLDKWDKALCEDLFLAAPKLYCPFRDCSAMLLLNDDEGENIGEAECPSCHRLFCARCYVPWHPGVECQVFQSLNEDERGREDLLVRELAGEKKWKRCPRCKFYVEKTQGCLHILCRCRFEFCYACGEQWTPNHGGCQRN* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0573 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 189 IPR013083 -
Dod06g0573 315 Pfam IBR domain, a half RING-finger domain 264 312 IPR002867 -
Dod06g0573 315 Pfam IBR domain, a half RING-finger domain 194 243 IPR002867 -
Dod06g0573 315 SUPERFAMILY RING/U-box 107 188 - -
Dod06g0573 315 Gene3D - 241 315 - -
Dod06g0573 315 SUPERFAMILY RING/U-box 254 313 - -
Dod06g0573 315 MobiDBLite consensus disorder prediction 1 23 - -
Dod06g0573 315 ProSiteProfiles Zinc finger RING-type profile. 111 156 IPR001841 -
Dod06g0573 315 ProSiteProfiles TRIAD supradomain profile. 107 315 IPR044066 -
Dod06g0573 315 SUPERFAMILY RING/U-box 185 247 - -
Dod06g0573 315 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 35 304 IPR031127 GO:0004842|GO:0016567
Dod06g0573 315 SMART ibrneu5 179 243 IPR002867 -
Dod06g0573 315 SMART ibrneu5 253 312 IPR002867 -
Dod06g0573 315 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 35 304 - -
Dod06g0573 315 ProSitePatterns Zinc finger RING-type signature. 129 138 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0573 Dod-Chr6 6957266 6958603 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0573 21 302 C3H Transcription Factor Family AT2G19610 23.906 1.56e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0573 K11975 - qsu:112001859 360.918