Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0550 ATGTATACTACTTCGAAGTTCCCAGCAACGCACTTCATACTTGTTGCTTCTGTGTTTCTGTTGCTGAGCTTTGCAAGTGCAGCAACTCCTCAATACAGCTCTCATGCCTGCACAGACTCATCCTCTTACCAGCCCAAATCCAAATTCGAATCCAACTTGAATGCCCTCCTGTCTTCCCTCGTCTCCAACTCCAGCGCCACCCTCAACGACGGGTTCTACAGCACCTCCGTGGCACGGGGTGCCGCCGACGAGATCAAGGGACTCTTCCTCTGCCGCGGCGATGTCAACGCCTCCGTCTGCCACGACTGCATCGCCGACGCAGCCGTGCAGATAAGGCGGCGCTGCACCAACCAAACAGAGGCTATAATCTGGTACGACGTGTGCTTGCTGCGCTACTCCAACGACTCATACTTGAACCACATAGTCCCAAGTGTGGGCTTGCAGGACGACAAAAACGTGTCTGGTTCTGACCTCGACCAATTCAGCGATTTGCTGGCGACAACGTTGCAAGCTGTGGCCGGACAAGCTGTGGCCGGACAAGCTGCGAACTCTCCTTCTCCGGGTAAGAAGTTTGCTACCAAGGAAGCTTTGTTCAAGGGCTCGCAGAAGCTCTACACACTGGCGCAGTGCACTCCCGACTTGTCCTCCTCTGACTGCAACACGTGTTTCCAAAGCAGCATAAGTGCCATTCCAACATGCTGTAATGGGAAACAAGGCGCACGAGTTCTGCTTCCAAGTTGCAATATCAGATATGAGTTGTACCCATTTTACAACGTGTCCGCGGTGTCCACTCAACCAGTGCTTCCCCCAACTTCAACTTCTTCAGGAAAAAGTAATATCTCTATAGTTGTTGCGATTGTTGTCCCAATTGGTGTGGCTGTGACACTTTTCATCGTCGGCTGCTGCTACCTGCGAAAGAGGGCAAGAAAGAAGTACAATTCATTTGCTCGGGATTCAATTCGGGAGGAACTTACTGATGTGGAGTCCTTGCAATTCGACTTGGCTACAATTGAAGATGCCACCAACAGCTTCTCGGATGAGAACAAGATTGGCCAGGGTGGATTTGGTGTGGTTTATAGGGGTGTTCTCCCTAATGGACAGGAGATAGCTGTGAAGAGGTTGTCAGTGACCTCCTTGCAGGGTGCACTAGAGTTCAGGAATGAAGTTAACCTTGTGGCCAAGCTTCAACATAGAAACTTAGTGAGGCTATTGGGGTATTGCTTGGAGGGGCGTGAGAAGATGCTTGTCTATGAATACATACCAAACAAAAGCCTTGATCACTTTCTATTCGATCTGGTGAAGCAGAGAGAGTTAGATTGGTCAAGACGCTACAAGATTATAATTGGCATTGCACGGGGAATTCTTTACCTCCATGAAGATTCCCAGCTTAGAATTATACATCGTGATCTCAAACCTAGTAATGTTCTATTAGATGAAAATATGAATCCAAAAATTTCAGATTTCGGGATGGCAAAAATTTTCCAGGGAGGTCAGACTCAAGTAAATACAGGAAGAATAGTTGGGACATTGCTTGGAAAAACTGGACTAAAGAATACACCTTTGGAGTTGTTGGATCCAACCCTAAGAGGTTCTTATTCAAGAAACGAAGTCATCAGATGCATCCATATTGGTTTATTGTGTGTTCAGGAAAATCCATCTGACAGGCCTTCAATGGCAACTGTTGCACTTATGTTGAACAGTTATTCAGTTACCTTATCATTACCACGACAGCCAGCTTCTTTCCTGCATGGAAGAACACCAAACAGGCTAAAAAATGGGCTTGATTCTGATCAGTCTCCCACCTGTTCAATTCCATGGTCTACCAATGAAGTATCCATGACTGAAATATACCCTCGTCCCCCCGTCAGCAAAGTGGTTAGAAAAGCTCAGTTCATGTTAGCTTTGAATTTGTTTCCGAGAAAAGCACTCCAAGAGATGAAATTTAGAGATGCATCCACATTGCCTTATTGTGCATTCAGAAAAGTTAAGTGGTTTAAGTGTTGTATGAACCCAATTTGGATTATTATTTTTAATTCAAGTGGTTGA 2046 0.4619 MYTTSKFPATHFILVASVFLLLSFASAATPQYSSHACTDSSSYQPKSKFESNLNALLSSLVSNSSATLNDGFYSTSVARGAADEIKGLFLCRGDVNASVCHDCIADAAVQIRRRCTNQTEAIIWYDVCLLRYSNDSYLNHIVPSVGLQDDKNVSGSDLDQFSDLLATTLQAVAGQAVAGQAANSPSPGKKFATKEALFKGSQKLYTLAQCTPDLSSSDCNTCFQSSISAIPTCCNGKQGARVLLPSCNIRYELYPFYNVSAVSTQPVLPPTSTSSGKSNISIVVAIVVPIGVAVTLFIVGCCYLRKRARKKYNSFARDSIREELTDVESLQFDLATIEDATNSFSDENKIGQGGFGVVYRGVLPNGQEIAVKRLSVTSLQGALEFRNEVNLVAKLQHRNLVRLLGYCLEGREKMLVYEYIPNKSLDHFLFDLVKQRELDWSRRYKIIIGIARGILYLHEDSQLRIIHRDLKPSNVLLDENMNPKISDFGMAKIFQGGQTQVNTGRIVGTLLGKTGLKNTPLELLDPTLRGSYSRNEVIRCIHIGLLCVQENPSDRPSMATVALMLNSYSVTLSLPRQPASFLHGRTPNRLKNGLDSDQSPTCSIPWSTNEVSMTEIYPRPPVSKVVRKAQFMLALNLFPRKALQEMKFRDASTLPYCAFRKVKWFKCCMNPIWIIIFNSSG* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0550 681 Pfam Protein kinase domain 345 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g0550 681 SMART serkin_6 344 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g0550 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Dod06g0550 681 Pfam Salt stress response/antifungal 37 134 IPR002902 -
Dod06g0550 681 Pfam Salt stress response/antifungal 157 254 IPR002902 -
Dod06g0550 681 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 510 - -
Dod06g0550 681 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 517 618 - -
Dod06g0550 681 Gene3D Transferase(Phosphotransferase) domain 1 420 511 - -
Dod06g0550 681 Gene3D Transferase(Phosphotransferase) domain 1 512 574 - -
Dod06g0550 681 Gene3D Phosphorylase Kinase; domain 1 305 419 - -
Dod06g0550 681 Gene3D - 30 137 IPR038408 -
Dod06g0550 681 Gene3D - 148 256 IPR038408 -
Dod06g0550 681 ProSiteProfiles Gnk2-homologous domain profile. 141 256 IPR002902 -
Dod06g0550 681 SUPERFAMILY Protein kinase-like (PK-like) 330 589 IPR011009 -
Dod06g0550 681 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Dod06g0550 681 ProSiteProfiles Gnk2-homologous domain profile. 31 137 IPR002902 -
Dod06g0550 681 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 510 - -
Dod06g0550 681 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 517 618 - -
Dod06g0550 681 ProSiteProfiles Protein kinase domain profile. 344 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0550 Dod-Chr6 6625816 6629562 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0550 17 619 Receptor kinase-like Gene Family AT4G05200 44.165 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dod06g0550 Pkinase 4.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0550 - - gmx:113000776 806.594