Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0542 ATGGACACGCTTCTCTTCAACATAAACAATGCAACCCCATTTCTACTCTTCCTTGTGTTTGGATTCCTTACATCATCAATCTTAGTAGCAGCAGCAGCAGCTCCAAATTACAACGGTATTTACTGCCCAAACAACGCCACCTACCAATCTAACATCACTTTCCAAACCAACCTCAATGTCCTCCTCTCCTCTCTTGTCTCCAACGCCACCCAAGGCGGCGGCGGCTCCTACTCCTCCGCCATGGGCTTCGGCACCACAAATGCCGTCAACGGCGTCTACCTCTGCCGCGGCGACGTCTCGTCCGCCACCTGCCAGAGCTGTGTCACCACCGCAGCCGCAGACATAACACGCCTCTGCCCCAACCAGACAGAGTCCATAATATGGTACGACGAGTGCATGCTTCGCTACACAAACCGTTACTTCAACCCCGTCAGCATCGTTCCACGTTTGAACCTGCGGGATGAAAGGAACATCTCTTCCTCGGACTTGGACGGATTCAACAAAATGTTGTTGGGGTTGTTGGACAGTTTGGCTGCGGAAGCTGCGAGTTCTCAGTCAACGACGAAATTTGCGACAGGGGAAGGGAACTTCACGAAGCAGGTAAGGGTGTATGGGTTGGCGCAGTGCGTGCCCGGCGTGACGTATACGCAGTGTGAGGGGTGTTTGCGAAATGCTTCCAGAACGCTTCCTGCGTGTTGTGAAGGGAAAGTGGGTGCCAGGGCTCTGCTTGCGTGGTGTAATATCAGGTACGATTGGTACCAGTTTTACAATACTAGTGGGACATCAGCATCGCCACCATCGGTTACTCCTCCTCCTTCAGGAAAGAAGAAATCTGGGTCACGAACAGCTGTTATAATTACTGTCATTGTGGTCGGTTCGATAATTCTCTTTTGTTTGGGTTGCTATTTCCTACTAAGAAGATCAAGGAAGAGTTATAAAACACTTCTAAGAGAAAATTTTGGGCATGAAAGCGAAACTTTACAGTCATTACAATTTAATTTGGCAACAATTGAAGCTGCTACAAAGAAGTTTTCAAATGAAAACAAAATTGGTAAGGGGGGATTTGGAGAAGTTTACAAGGGTATTCTGGTAGATGGACGACAAATAGCAGTAAAAAAGCTTTCCCAAACTTCAGGACAAGGTGCAGTAGAATTCAAGAATGAGGTTTTACTAATAGCTAAACTTCAACACAGAAATTTAGTGACATTGTTAGGATTTTGCTTGCAAGAACAAGAAAAGATGTTAATCTATGAATATGTGCCCAACAAGAGTCTTGATTACTTTTTATTCGGTAATGAAATTCTAATCTCATTCTATTGTTCATCTAAGTTCTATATCCATATGTTCTTTTAA 1353 0.4531 MDTLLFNINNATPFLLFLVFGFLTSSILVAAAAAPNYNGIYCPNNATYQSNITFQTNLNVLLSSLVSNATQGGGGSYSSAMGFGTTNAVNGVYLCRGDVSSATCQSCVTTAAADITRLCPNQTESIIWYDECMLRYTNRYFNPVSIVPRLNLRDERNISSSDLDGFNKMLLGLLDSLAAEAASSQSTTKFATGEGNFTKQVRVYGLAQCVPGVTYTQCEGCLRNASRTLPACCEGKVGARALLAWCNIRYDWYQFYNTSGTSASPPSVTPPPSGKKKSGSRTAVIITVIVVGSIILFCLGCYFLLRRSRKSYKTLLRENFGHESETLQSLQFNLATIEAATKKFSNENKIGKGGFGEVYKGILVDGRQIAVKKLSQTSGQGAVEFKNEVLLIAKLQHRNLVTLLGFCLQEQEKMLIYEYVPNKSLDYFLFGNEILISFYCSSKFYIHMFF* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0542 450 ProSiteProfiles Gnk2-homologous domain profile. 146 255 IPR002902 -
Dod06g0542 450 ProSiteProfiles Gnk2-homologous domain profile. 36 141 IPR002902 -
Dod06g0542 450 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524
Dod06g0542 450 Gene3D - 151 255 IPR038408 -
Dod06g0542 450 Gene3D - 36 141 IPR038408 -
Dod06g0542 450 Pfam Salt stress response/antifungal 163 251 IPR002902 -
Dod06g0542 450 Pfam Salt stress response/antifungal 42 138 IPR002902 -
Dod06g0542 450 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 433 - -
Dod06g0542 450 SUPERFAMILY Protein kinase-like (PK-like) 315 435 IPR011009 -
Dod06g0542 450 Pfam Protein tyrosine and serine/threonine kinase 346 430 IPR001245 GO:0004672|GO:0006468
Dod06g0542 450 ProSiteProfiles Protein kinase domain profile. 344 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g0542 450 Gene3D Phosphorylase Kinase; domain 1 307 419 - -
Dod06g0542 450 SMART tyrkin_6 344 450 IPR020635 GO:0004713|GO:0006468
Dod06g0542 450 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 26 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0542 Dod-Chr6 6573756 6576138 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0542 16 433 Receptor kinase-like Gene Family AT4G05200 44.598 8.86e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dod06g0542 PK_Tyr_Ser-Thr 9.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0542 - - ccaj:109813299 569.311