Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0540 ATGGCACCTTCAAGAGTGATTTCCCTTCTTTCTCTACTTGCTATACTCTTATCTCATACCACCGCCCAGCCAAGCTTCCTGTCCCATTTTTGCATCAATGATAAAGGAAACTACACTGCAAACAGTGCCTACCAGACCAACCTCAACACCCTTTTGTCCGATTTGTCTTCCAACACAGAAATTGACTATGGCTTCTACAACTTCTCTCAGGGACAAGGCTCTGACAAAGTTAACGCGATTGGGATGTGCAGAGGAGATGTTAAGCCAGATGCTTGCCGTAGTTGCCTCAATGATTCCAGAGTCCTCCTCACACGGCGTTGTCCAAACCAGAAGGAGGCCATTGGATGGTATGACAATTGCATGCTCCGCTACTCAAACCGCACAATATTTGACACTATGGAAACTTCACCTTCGTTTTATATGTGGAACCAGAACAATGCGACAGAACCGGATAAGTTCAATCAAGTACTCAGCAACTTGATGGACAAGCTAAGAAACACAGCCATACCAGGTGACTCTCGCCTTAAATATGATGCAGGAAGCACAGCAGGTCCAAGCTTTCAAACTATATTTGCTCTTCTGCAGTGCACACCAGATTTATCAGAGCTAGAGTGCAATAGTTGCTTGGTTGGAGCTATCTCAGAAATCTCTATTTCTAATGCTGGCAAGAAAGGTGGCAGAATCATAAAGCCAAGCTGCAATCTTAGATTTGAGACATCGCCTTTCTATGACTCTACAGCTGATGATGCCTCTCCACCATCGCCATCACAAGTACCTCCTCCTCCTCCAGTCACCAATAGCAATACCAATAATACCGGTTCTACCGAAGGAAAGAGCAACTCAACAACTATCATTGTGGTTGCGGTAGTTGTGCCAATTGTTGTCATCGCAGTACTGCTCATCTCTGTTTGCATCTTCTTGAGAACAAAGAAGCATAAGAAAACTACTGGCAATGATGTTGAAGTTGACAATGAAATTGAATCCGCTCAGACATTGCAATTCAACTTTGACACCATCAAAACAGCTACAAATGACTTCTCTGAGGCAAATATGCTAGGACGAGGAGGATTTGGACCTGTTTTCAAGGGAAAGCTTTCAAATGGACAGGAAGTTGCTGTCAAAAGGTTGTCAATGAATTCAGGACAAGGAGATACGGAATTTAAAAATGAAGTTCTGTTAGTGGCAAAGCTTCAACACCGGAATTTGGTCAGGCTGCTTGGTTTTTGCTTGGAAGGAAATGAAAAATTACTGGTCTATGAGTTTGTTCCCAATAAAAGCCTAGACTACTTCATATTTGATCCAATCAAGCGAGCACATTTGGATTGGGGAAGGCGATACAAAATCATAGGAGGCATTGCTAGAGGCCTTCTTTACCTTCATGAGGATTCACGTTTGCGTATCATTCATCGCGATCTCAAAGCAAGCAATATTCTCTTAGATGTAGAAATGAATGCTAAGATATCAGATTTTGGCATGGCAAGATTAATTGTTGTGGATCAAACTCAAGGCAACACGAGTAGAATTGTTGGAACATATGGATATATGGCACCCGAGTATGTAATGCAGGGACATTTCTCCGTGAAGTCTGATGTCTATAGTTTTGGCGTACTGCTTCTAGAGATAGTAAGTGGACAAAAAAATAGTGGCTTCCGCAATGGAGAGGATGTAGAGGATCTAATAAGCTTTGCCTGGAAAAATTGGAACCTTGGAACAGCATCAAACCTAATAGATCCCACAATAAATAATGGTTCAAGAAATGAGATAATGAGATGCATCCATATTGGTTTACTATGTTGTCAGGAAGATTTAGCCGATAGACCAACTATGGCTTCTATTGTACTCATGCTTAATAGCTTGTCTCTCACTCTCCCAATGCCATCAAAGCCAGCATTTGTTATGCATAGCAGAAGTTTGTCAGATATTCCGTCATGGGAGTATAATTCAGGAGCACCAGAGTCAAGCAATTAA 1968 0.4202 MAPSRVISLLSLLAILLSHTTAQPSFLSHFCINDKGNYTANSAYQTNLNTLLSDLSSNTEIDYGFYNFSQGQGSDKVNAIGMCRGDVKPDACRSCLNDSRVLLTRRCPNQKEAIGWYDNCMLRYSNRTIFDTMETSPSFYMWNQNNATEPDKFNQVLSNLMDKLRNTAIPGDSRLKYDAGSTAGPSFQTIFALLQCTPDLSELECNSCLVGAISEISISNAGKKGGRIIKPSCNLRFETSPFYDSTADDASPPSPSQVPPPPPVTNSNTNNTGSTEGKSNSTTIIVVAVVVPIVVIAVLLISVCIFLRTKKHKKTTGNDVEVDNEIESAQTLQFNFDTIKTATNDFSEANMLGRGGFGPVFKGKLSNGQEVAVKRLSMNSGQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGNEKLLVYEFVPNKSLDYFIFDPIKRAHLDWGRRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDVEMNAKISDFGMARLIVVDQTQGNTSRIVGTYGYMAPEYVMQGHFSVKSDVYSFGVLLLEIVSGQKNSGFRNGEDVEDLISFAWKNWNLGTASNLIDPTINNGSRNEIMRCIHIGLLCCQEDLADRPTMASIVLMLNSLSLTLPMPSKPAFVMHSRSLSDIPSWEYNSGAPESSN* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0540 655 Gene3D Transferase(Phosphotransferase) domain 1 422 624 - -
Dod06g0540 655 SUPERFAMILY Protein kinase-like (PK-like) 332 645 IPR011009 -
Dod06g0540 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 6 640 - -
Dod06g0540 655 ProSiteProfiles Protein kinase domain profile. 346 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g0540 655 Pfam Protein tyrosine and serine/threonine kinase 350 614 IPR001245 GO:0004672|GO:0006468
Dod06g0540 655 Gene3D - 23 128 IPR038408 -
Dod06g0540 655 Gene3D - 135 242 IPR038408 -
Dod06g0540 655 MobiDBLite consensus disorder prediction 244 278 - -
Dod06g0540 655 ProSiteProfiles Gnk2-homologous domain profile. 135 242 IPR002902 -
Dod06g0540 655 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 6 640 - -
Dod06g0540 655 Gene3D Phosphorylase Kinase; domain 1 306 421 - -
Dod06g0540 655 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Dod06g0540 655 CDD STKc_IRAK 352 619 - -
Dod06g0540 655 Pfam Salt stress response/antifungal 31 126 IPR002902 -
Dod06g0540 655 Pfam Salt stress response/antifungal 145 239 IPR002902 -
Dod06g0540 655 SMART serkin_6 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod06g0540 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0540 Dod-Chr6 6558852 6569146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0540 1 635 Receptor kinase-like Gene Family AT4G21410 50.840 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dod06g0540 PK_Tyr_Ser-Thr 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0540 - - gmx:102662291 961.829