LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod06g0539	ATGCTTTTATTTCTTTGTATTGTTATCACACTCATATCTCAATCCAACGCCCAGCCAAAATTCCTAGACTACCTCTGTGGGGATGCCAAGGGTAATTACACTGCTAACAGTACCTACCAGAGCAACCTCAATACCCTTTTGTCCAACCTTTCTTCTAACACAAAGATTGACTATGGCTTCTACAACTCTTCTTATGGCCAAGGCAATGACAGAGTAAACGCAATTGGGCTATGCAGAGGAGATGTTAAGCTAAATGATTGCCTTAGCTGCCTCAATGATTCTAGAGTCCTCCTCACTCAACTGTGTCCAAATCAAAAGGAGGCAATTGGGTGGTATGACAAGTGCATGTTACGCTACTCCAACAGATCGATATTTAACACCAGGGAAACTTTACCTGGTTTTTCTTTGAGTAACACTGGTAATGCAACAGATATTGATCAGTTCAACCAAGTGCTGAGGGACTTGCTAGATAGCCTAATAAGCAAGGCTGCATCAGGGGACTCCCTACGAAAATTTGCTGCAGCAAGTGTTAAAGGGCCAGGCTTTCAAACTATATATGGTCTTGTGCAGTGTACACCTGATTTGTCTCAGCAAGATTGTAATGGTTGTTTGATTCAGGCTATCTCGGGAATCCCAAAATGTTGTGATAGCAAGAAAGGTGGTAGAATTTTAGGACCAAGCTGTAACTTCAGATATGAGATAGGCCCCTTCTTTGACTCTGCAAATGTTGCAACACCAACATCACCACCATCGCCATCACCAGGGTCTGATCCTCCCCCTTCATCTACTGATGCCTTGTCAACAGAAGGAAAGAGCAACACATCACGAACTGTTATAATAGCAGTAGTTGTGCCAATTATTGCTCTTGTTATTCTGGCCATCCTTATCTGCTTCTACTTGAGAATGAGAACGCCCCAGAGACATGTTGAAGTTGAAGCAGAAAATGGTGACGAGATTAGATCAACTGAGACATTACAATTGGACTTTGCCTCCGTCATGGCTGCTACCAACAACTTTGCTGAAGCAAATAAGCTAGGACAAGGAGGATTTGGACCTGTTTACAAGGGCATGCTCTCCAATGGACAGCAGGTTGCAGTCAAAAGGTTGTCTAGGAATTCATTTCAAGGAGATTTAGAGTTTAAGAATGAAGTATTGTTAGTGGCCAAGCTTCAGCACCGAAATTTGGTTAGGCTACTAGGCTTTTGTTTGGAAAGAAGAGAAAGGCTGCTGGTCTATGAATTTGTGCCCAATAAAAGCCTTGATTTCTTCATATTTGATAGAATCAAACGTGCACAATTGGATTGGGAAAGACGGTACAAAATCATAGGAGGCATTGCTAGAGGTCTTCTTTACCTCCATGAGGATTCACGCTTGAGGATTATTCATCGCGATCTCAAAGCAAGCAACATTCTATTGGATGCAGAGATGAATCCAAAAATCTCAGATTTTGGTATGGCGAGACTGTTTGCAGTGGATCAAACTCAGGGCAACACAAGCAGAATTGTTGGAACTTATGGATATATGGCACCTGAATATGCTATCCATGGACAATTCTCAATAAAGTCCGATGTTTTTAGTTTTGGTGTTTTGGTTCTGGAGATTGTAAGTGGCCAGAAAAATAGTGGTGTTCGTCAAGGAAATAATACAGAGGACCTAGTAAGCTTTGCATGGAAAAGCTGGAGGGAAGGGACAGCCTCGAATATTGTTGATCCCACAATTAATGATGGCTCAAGCAATGAAATAATGAGATGTATCCACATAGGGCTGCTTTGTGTTCAGGAAAATGTAGCTGACAGACCAACCATGGCTTCAATTGTACTCATGCTCAGCAGCCAATCTGTTACTCTTCCATTGCCCTCACAACCTGCTTTGTTGATTAACAATAGACGTTTATCAGACATCCGTTCAGAAGAGTATAATTCCGAGACAAGAAGTTTAGGTGAATCAAGTAATGAACCTGTTCAAGCATCAGTGAATGAAGCCTCCATTACTGAGCCGTTTCCTCGCTAG	2010	0.4209	MLLFLCIVITLISQSNAQPKFLDYLCGDAKGNYTANSTYQSNLNTLLSNLSSNTKIDYGFYNSSYGQGNDRVNAIGLCRGDVKLNDCLSCLNDSRVLLTQLCPNQKEAIGWYDKCMLRYSNRSIFNTRETLPGFSLSNTGNATDIDQFNQVLRDLLDSLISKAASGDSLRKFAAASVKGPGFQTIYGLVQCTPDLSQQDCNGCLIQAISGIPKCCDSKKGGRILGPSCNFRYEIGPFFDSANVATPTSPPSPSPGSDPPPSSTDALSTEGKSNTSRTVIIAVVVPIIALVILAILICFYLRMRTPQRHVEVEAENGDEIRSTETLQLDFASVMAATNNFAEANKLGQGGFGPVYKGMLSNGQQVAVKRLSRNSFQGDLEFKNEVLLVAKLQHRNLVRLLGFCLERRERLLVYEFVPNKSLDFFIFDRIKRAQLDWERRYKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDAEMNPKISDFGMARLFAVDQTQGNTSRIVGTYGYMAPEYAIHGQFSIKSDVFSFGVLVLEIVSGQKNSGVRQGNNTEDLVSFAWKSWREGTASNIVDPTINDGSSNEIMRCIHIGLLCVQENVADRPTMASIVLMLSSQSVTLPLPSQPALLINNRRLSDIRSEEYNSETRSLGESSNEPVQASVNEASITEPFPR*	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod06g0539	669	MobiDBLite	consensus disorder prediction	637	669	-	-
	Dod06g0539	669	MobiDBLite	consensus disorder prediction	243	270	-	-
	Dod06g0539	669	CDD	STKc_IRAK	345	609	-	-
	Dod06g0539	669	Gene3D	Phosphorylase Kinase; domain 1	302	414	-	-
	Dod06g0539	669	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	3	644	-	-
	Dod06g0539	669	SMART	serkin_6	339	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod06g0539	669	SUPERFAMILY	Protein kinase-like (PK-like)	329	643	IPR011009	-
	Dod06g0539	669	Pfam	Salt stress response/antifungal	140	233	IPR002902	-
	Dod06g0539	669	Pfam	Salt stress response/antifungal	26	121	IPR002902	-
	Dod06g0539	669	Gene3D	-	19	123	IPR038408	-
	Dod06g0539	669	Gene3D	-	133	237	IPR038408	-
	Dod06g0539	669	ProSiteProfiles	Gnk2-homologous domain profile.	130	237	IPR002902	-
	Dod06g0539	669	MobiDBLite	consensus disorder prediction	643	662	-	-
	Dod06g0539	669	ProSiteProfiles	Gnk2-homologous domain profile.	21	124	IPR002902	-
	Dod06g0539	669	ProSiteProfiles	Protein kinase domain profile.	339	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod06g0539	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Dod06g0539	669	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	3	644	-	-
	Dod06g0539	669	Gene3D	Transferase(Phosphotransferase) domain 1	415	616	-	-
	Dod06g0539	669	Pfam	Protein tyrosine and serine/threonine kinase	343	607	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod06g0539	Dod-Chr6	6553627	6557045	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod06g0539	17	643	Receptor kinase-like Gene Family	AT4G38830	51.638	0.0	644

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Dod06g0539		PK_Tyr_Ser-Thr	7.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod06g0539	-		-	gmx:113000773	969.918