Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0526 ATGTTCAAGCAAACAAGGAAAACCACAGGGCGCAAGAAGATCGAGATCAAGAAGCTCGACAAGGAGGCCAACAAGCAAGTCACATTCTCAAAACGAAGAGCAGGCTTGTTCAAAAAAGCAAGTGAACTCTGCATCTTATGCAATGCTCAAGCAGCTATTATTGTGTTCTCCCCAGCAGACAAGCTGTTCTGCTTTGGAGAACCCAACACCGAAGCCATCATCACTCGCTTCCTCAAAGGAACCGCAGAGCTTGAGCAGCCTACAACAACAGCAAAGTCTAAAGGCAAATCATCATCAATGTCCTATGAAGAGCACAACAAGAAATATGAGGACACCATGAAGGTGTTGGAGATGGAGAAGAAGAGTTTGGCAGAGATGGAAACTTTTGCTAAGGTTTGTAAGAGAGGAGAATGGTGGAACGAGCAGATTGATGAGATGAGTGCTGAACAGCTGGAGCAGTTTGTGGTGGCCATTTATGAGTTAAGGAGGAGGCTTGCTGAAAGGGCTGGTGAACTCATGATGATACATTCAATGTTATAG 540 0.45 MFKQTRKTTGRKKIEIKKLDKEANKQVTFSKRRAGLFKKASELCILCNAQAAIIVFSPADKLFCFGEPNTEAIITRFLKGTAELEQPTTTAKSKGKSSSMSYEEHNKKYEDTMKVLEMEKKSLAEMETFAKVCKRGEWWNEQIDEMSAEQLEQFVVAIYELRRRLAERAGELMMIHSML* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0526 179 Gene3D - 21 128 IPR036879 GO:0003677|GO:0046983
Dod06g0526 179 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Dod06g0526 179 Coils Coil 99 126 - -
Dod06g0526 179 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Dod06g0526 179 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 176 - -
Dod06g0526 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 65 IPR002100 GO:0003677|GO:0046983
Dod06g0526 179 PANTHER MADS BOX PROTEIN 7 176 - -
Dod06g0526 179 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977|GO:0045944
Dod06g0526 179 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Dod06g0526 179 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Dod06g0526 179 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Dod06g0526 179 SUPERFAMILY SRF-like 10 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0526 Dod-Chr6 6369430 6370106 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0526 5 154 Type I MADS-box Gene Family AT5G60440 40.397 1.90e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod06g0526 SRF-TF 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0526 - - cam:101502875 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0526 06 6369430 6370106 Dod06g0526 06 6369430 6370106 ECH
Dod02g1385 02 16679631 16680481 Dod06g0526 06 6369430 6370106 PCT