Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0525 ATGTCGACAGCAAGAAAGAGCAGAGGCCGCCAAAAGATCGAGATGAAGAAGATGAGCAATGAGAGCAACCTGCAAGTCACGTTCTCCAAGCGCCGCAGCGGGTTGTTCAAGAAAGCCAGCGAGCTTTGCACCCTCTGTGGCGCTGACGTGGCACTCATTGTGTTCTCCCCAGGGGAGAAGGTCTTCTCCTTTGGCCACCCAAACGTGGACGCGGTCATTGATCGCTACCTCACGCGCGGCCCGGCACACAACTCGGGGACCATGCAGTTCATCGAGGCCCACCGCAACGCCAACGTGCGTGAGCTCAACGCACACCTCACGCAGCTGAACAACCAGCTCGAGGCCGATAAGAAGCGTGGTGATGAGCTCAATCGCCTTCGTAGGGCCACCATGGCTCATTTCTGGTGGACCTTGCCCGTCGAGGAGATGAGCAAGGCCCAACTGGAGCAGCTGAAGGTGGCCCTCGGCGAGCTCAAGAAGAACGTCACACTCACCGCTGATAGGCTCCTCGTTCAAAGTGCTGTTGCTAACCCCGTTCAGTTCTTTGGCCCGTCGTCTTCGAACGCCGTGGTGCATCACCAGCCTCCTCCTCCAACTCCTGTTCCTGCTGTCGCTGCTCCTCCTCCGATGTTTGCTCCGCAGATGCTTCAGCCTGCGGCGATGATTCACCAGAACCCTATGATGCAGAATCATATGTTTGATGGGAGCATGATGCGTCACCATGGGTTCAACATCAACAACATGGGAGGTTATGGACCCGCTACTGGGTTCTTTTGA 777 0.5676 MSTARKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSFGHPNVDAVIDRYLTRGPAHNSGTMQFIEAHRNANVRELNAHLTQLNNQLEADKKRGDELNRLRRATMAHFWWTLPVEEMSKAQLEQLKVALGELKKNVTLTADRLLVQSAVANPVQFFGPSSSNAVVHHQPPPPTPVPAVAAPPPMFAPQMLQPAAMIHQNPMMQNHMFDGSMMRHHGFNINNMGGYGPATGFF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0525 258 PANTHER MADS BOX PROTEIN 7 199 - -
Dod06g0525 258 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Dod06g0525 258 Coils Coil 96 126 - -
Dod06g0525 258 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 199 - -
Dod06g0525 258 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Dod06g0525 258 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Dod06g0525 258 Gene3D - 87 177 - -
Dod06g0525 258 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Dod06g0525 258 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Dod06g0525 258 MobiDBLite consensus disorder prediction 1 21 - -
Dod06g0525 258 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Dod06g0525 258 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Dod06g0525 258 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Dod06g0525 258 Coils Coil 141 161 - -
Dod06g0525 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0525 Dod-Chr6 6354547 6355323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0525 4 189 Type I MADS-box Gene Family AT5G60440 59.788 9.00e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod06g0525 SRF-TF 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0525 - - gmx:100794751 291.582