Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0505 ATGGCCAGTTTTGGAGGAACCACACAAAAGTGCATGGCCTGTGACAAAACAGTGTACCTTGTTGATAAGCTTACCGCAGATGGCCGTATCTATCACAAGGCCTGCTTCCGTTGCCACCATTGCCGCAGTACCCTTAAGTTTATATCGCGTGTAAGCTGCAAAATCACTGGGGCCAAAAGTACAAAACGACAAAGCCCAAGTGCAATTCGTGACAGACAAAATGGCCAACTTAACCCAATCCATTTTGTGCACTAA 255 0.4627 MASFGGTTQKCMACDKTVYLVDKLTADGRIYHKACFRCHHCRSTLKFISRVSCKITGAKSTKRQSPSAIRDRQNGQLNPIHFVH* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0505 84 MobiDBLite consensus disorder prediction 59 84 - -
Dod06g0505 84 Gene3D Cysteine Rich Protein 2 65 - -
Dod06g0505 84 Pfam LIM domain 11 46 IPR001781 -
Dod06g0505 84 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 48 - -
Dod06g0505 84 MobiDBLite consensus disorder prediction 59 74 - -
Dod06g0505 84 PANTHER OS06G0237300 PROTEIN 3 48 IPR045268 GO:0051015
Dod06g0505 84 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Dod06g0505 84 ProSiteProfiles LIM domain profile. 9 72 IPR001781 -
Dod06g0505 84 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0505 Dod-Chr6 6105684 6108194 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod06g0505 LIM 1.9e-06 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0505 K09377 - qsu:112034665 97.8265