Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0495 ATGGAGCCTGCTGAGATAATTTCTGAGGAATGGAGCTCCCTTAGTGGATTGTACACAGCTGAAGAAGCTGACTTCATAAGCCAGTTGCTTGGTAACTACTCAGACCAAGAGCAGCTGTATGGAAATCTCAATTTGGGAATTCCATCTGCATTATGGCCTGGCCATGAATCCACAGTAGTGAGCGTGACAGGCATCAATAACAGTCCATACTATCCTGAAAATGTTGCTAGTAACACTAATCTTTTGAGTTTTTTACAAGGAAGTGGCTCCACTGCTGACAGTGGTAATATATTTCCAACTACAAGTGGTGGCAACTTGAATGATCCAGCTACCAACATTGGCTACATGCCAGTGGGTTTTTCCTTGGTGGATCCCTCATTCAGCCCATATAGTATTCAAGGGAATGACAGCCAACAGATACATGAAAACACTGATAAGGAGTTAGGTGTAGAGGTTATCGCTGACAGGAATTTGCAGGCTCAGAAGGAATGTGAAGAGCCACTTTCTGAACCGACAGAAGATTATATAACCGGCAAGCTGGAGAAGTCAAGAAAAAGATCTAAAAGTTCAACTGAGGTCCCAAAGAACAAGAGAAATGTTAAGTCTACAAAGAAACAAAAGTCTGCTTCTATAAACAGGACTGAGGAGGAAACATGTCCTGGTCTTCAGGGGCAGAACTTGAGCAGTTACTGCTCAGAGGATGACTCCAATGCTTCTCAGGAGATAAATGGAGGAGATTCCTCAAGCTTGAGCCCAAAAGATTCCACACCTCTCAAGTTAAATGGCAAATCAAGATCTAATAGAGGTTCAGCTACTGATCCACAGAGTGTCTATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCCTACAAAACCTAGTCCCCAATGGAACCAAGGTGGATATAAGCACCATGCTTGAGGAAGCTGTCCAGTATGTGAAATTTTTACAGCTCCAAATTAAGCTCCTGAGTTCTGATGATCTCTGGATGTATGCTCCCATTGCGTACAATGGAATGAACATTGGACTAAACCTCAATATTAGACCACCAAAGCAACCATAG 1071 0.4239 MEPAEIISEEWSSLSGLYTAEEADFISQLLGNYSDQEQLYGNLNLGIPSALWPGHESTVVSVTGINNSPYYPENVASNTNLLSFLQGSGSTADSGNIFPTTSGGNLNDPATNIGYMPVGFSLVDPSFSPYSIQGNDSQQIHENTDKELGVEVIADRNLQAQKECEEPLSEPTEDYITGKLEKSRKRSKSSTEVPKNKRNVKSTKKQKSASINRTEEETCPGLQGQNLSSYCSEDDSNASQEINGGDSSSLSPKDSTPLKLNGKSRSNRGSATDPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLNLNIRPPKQP* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0495 356 MobiDBLite consensus disorder prediction 161 282 - -
Dod06g0495 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 335 IPR036638 GO:0046983
Dod06g0495 356 PANTHER TRANSCRIPTION FACTOR BHLH54 6 352 - -
Dod06g0495 356 MobiDBLite consensus disorder prediction 175 199 - -
Dod06g0495 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 352 - -
Dod06g0495 356 Gene3D - 273 333 IPR036638 GO:0046983
Dod06g0495 356 MobiDBLite consensus disorder prediction 213 274 - -
Dod06g0495 356 SMART finulus 276 325 IPR011598 GO:0046983
Dod06g0495 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Dod06g0495 356 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0495 Dod-Chr6 6033171 6035046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0495 10 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 39.247 5.09e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g0495 HLH 8.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0495 - - gmx:100817334 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0495 06 6033171 6035046 Dod06g0495 06 6033171 6035046 ECH