Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0492 ATGACATCTGTCCTGTCGCCGCCGCCAGCGCTCGGGCGAGAGCTGTCGCAGCCTCCGTCGGACGGCATCTCCAACCTCCGCTTCTCCAACCACAGCGACTTCCTCCTCGTCTCCTCGTGGGACAAGAGCGTGCGGCTGTACGATGCGAGCGCGAATGTGGTGAGGGGAGAGTTCATGCACGGTGGCCCTGTCCTCGATTGCTGCTTCCACGACGACTCCTCCGGTTTCAGTGCCTCTGCCGACAACACCGTCCGCCGCCTCCTCTTCTCCTCCAACAAGCACGACATCCTCGGCCGCCACGATGCCCCTGTTCGTTGTGTTGAGTACTCCTATGCCGCAGGGCAATTGATCACCGGTAGTTGGGACAAAACCCTGAAATGTTGGGACCCTAGAGGTGCAAGTGGGCAAGAGCGCACTCTAGTTGGGACATATCCACAACCTGAGCGTGTTTACTCTCTCTCTCTTGTTGGAAATCGGCTAGTTGTAGCAACGGCTGGAAGACATGTCAATATTTATGATTTGAGGAACATGTCTCAACCTGAGCAACGTAGAGAATCTTCATTGAAATATCAAACCAGATGTGTGCGCTGTTACCCAAACGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTAGCCATGGAATTCTTTGACCTCTCTGAGGCTAGCCAAGCCAAAAAATATGCTTTCAAGTGTCACAGAAAATCAGAAGCTGGAAGGGATATCGTCTATCCTGTAAATGCCATTGCATTCCACCCCATATATGGAACGTTTGGCACAGGAGGTTGTGACGGGTATGTCAACGTGTGGGACGGAAACAACAAGAAGAGACTATACCAGTACTCAAAATACCCAACCAGCATTGCTGCACTGTCATTTAGCAGAGATGGACGGCTCCTGGCTGTTGCATCTAGTTATACATTCGAAGAGGGACCTAAATCCCAAGAAAAAGATGCCATCTACATTCGCAGCGTAAACGAGATTGAGGTCAAGCCGAAACCCAAGGTCTTTCCCAATCCTCCAGCGTGA 1032 0.5174 MTSVLSPPPALGRELSQPPSDGISNLRFSNHSDFLLVSSWDKSVRLYDASANVVRGEFMHGGPVLDCCFHDDSSGFSASADNTVRRLLFSSNKHDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFGTGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKSQEKDAIYIRSVNEIEVKPKPKVFPNPPA* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0492 343 Pfam WD domain, G-beta repeat 21 48 IPR001680 GO:0005515
Dod06g0492 343 Pfam WD domain, G-beta repeat 97 129 IPR001680 GO:0005515
Dod06g0492 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 281 IPR001680 GO:0005515
Dod06g0492 343 PANTHER MRNA EXPORT FACTOR AND BUB3 9 338 - -
Dod06g0492 343 SUPERFAMILY WD40 repeat-like 18 306 IPR036322 GO:0005515
Dod06g0492 343 Gene3D - 11 337 IPR015943 GO:0005515
Dod06g0492 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 129 IPR001680 GO:0005515
Dod06g0492 343 SMART WD40_4 224 272 IPR001680 GO:0005515
Dod06g0492 343 SMART WD40_4 8 48 IPR001680 GO:0005515
Dod06g0492 343 SMART WD40_4 90 129 IPR001680 GO:0005515
Dod06g0492 343 SMART WD40_4 137 173 IPR001680 GO:0005515
Dod06g0492 343 SMART WD40_4 51 88 IPR001680 GO:0005515
Dod06g0492 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 129 - -
Dod06g0492 343 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 9 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0492 Dod-Chr6 6008101 6011645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0492 78 305 U-box Gene Family AT2G33340 25.431 4.50e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0492 K02180 - gmx:100808389 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0492 06 6008101 6011645 Dod06g0492 06 6008101 6011645 ECH