Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0490 ATGGCTTTGGAGGCTCTGAATTCTCCAACAGCAGGCACCACGCCTTTCAATATCCCTCGCTTCCAACAAGAAGAGGAAGAAGAGGAGGAGGTTGACCTTCACCACCTGCGTGAGCCATGGGCAAAGAGGAAGCGCTCAAAACGACCCCGTATCGAGAACCCTCCCACGGAAGAAGAGTACCTCGCACTCTGCCTCATCATGTTAGCTCACAGCGGCAACAACAACAACAACAAGACCTCCACCTCTCTGCAGCACGAAACAGAGTCATCATCTTCACAACCGCCGCAACAACAAGGGTCCCCATCGCCGCCTATGAAGCTGAGTCACAGGTGTACCGTTTGCAACAAGGCCTTTTCTTCTTACCAAGCACTCGGTGGCCATAAAGCCAGCCACCGCAAGAACTTGTCATCATCTGAAAACAACGCCGCCGCCACCGCCACCGTAGCTGCAGCCCCCAACGACAACGTCTCCGCCTCCACCACCGCCAGCGGCGGAGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCTACTGGTCAGGCACTGGGTGGTCACAAGCGCTGCCACTACGACGGTGGCAACAACAACAGCAACAACGTTAACGCCAACAACAGCAGTGTTGCGATGTCATCTGAGGGCGGCGCCTCCGCCCACAGCCACCGTGACTTTGACCTCAACCTCCCTGCGCCGTTGACTGAGTCATGGCCGCCGGCGGGGCTTGACGGCGGCGAGTCCAAGAACAAGAAGAAGAAGAAGACCAAGGTTGACGGCGGCGAACAAGAGGTGGAAAGCCCTTTGCCGGTAACCGCCAAGAGGCCGCGTTTGTTTTCTTTTGAAGATGACGATGATGATGAGAAGAGGATGTAA 873 0.559 MALEALNSPTAGTTPFNIPRFQQEEEEEEEVDLHHLREPWAKRKRSKRPRIENPPTEEEYLALCLIMLAHSGNNNNNKTSTSLQHETESSSSQPPQQQGSPSPPMKLSHRCTVCNKAFSSYQALGGHKASHRKNLSSSENNAAATATVAAAPNDNVSASTTASGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNNNSNNVNANNSSVAMSSEGGASAHSHRDFDLNLPAPLTESWPPAGLDGGESKNKKKKKTKVDGGEQEVESPLPVTAKRPRLFSFEDDDDDEKRM* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0490 290 Pfam C2H2-type zinc finger 169 193 - -
Dod06g0490 290 Pfam C2H2-type zinc finger 109 133 - -
Dod06g0490 290 MobiDBLite consensus disorder prediction 245 261 - -
Dod06g0490 290 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Dod06g0490 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Dod06g0490 290 PANTHER ZINC FINGER PROTEIN ZAT10 1 255 - -
Dod06g0490 290 SMART c2h2final6 169 191 IPR013087 -
Dod06g0490 290 SMART c2h2final6 109 131 IPR013087 -
Dod06g0490 290 MobiDBLite consensus disorder prediction 1 55 - -
Dod06g0490 290 MobiDBLite consensus disorder prediction 201 290 - -
Dod06g0490 290 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 255 IPR044653 GO:0003700
Dod06g0490 290 MobiDBLite consensus disorder prediction 276 290 - -
Dod06g0490 290 MobiDBLite consensus disorder prediction 73 96 - -
Dod06g0490 290 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Dod06g0490 290 MobiDBLite consensus disorder prediction 73 108 - -
Dod06g0490 290 Gene3D Classic Zinc Finger 107 191 - -
Dod06g0490 290 SUPERFAMILY beta-beta-alpha zinc fingers 109 191 IPR036236 -
Dod06g0490 290 MobiDBLite consensus disorder prediction 201 215 - -
Dod06g0490 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0490 Dod-Chr6 5991756 5993201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0490 1 280 C2H2 Transcription Factor Family AT1G27730 41.980 4.83e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod06g0490 zf-C2H2_6 1.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0490 - - adu:107467374 326.25