Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0488 ATGAGCTGCAACGGTTGTCGTGTCCTCCGGAAAGGATGCAGCGAGGACTGCATGCTACGACATTGCCTGATGTGGATACAGAACCCACAAGCACAGGCTCACGCCACCGTCTTTGTCGCCAAGTTCTTCGGTCGTGCCGCCCTCATGTCTTTCCTTTCCTCCGTACCCACCAATCAAAGATCTGCATTGTTTCAGTCTCTACTATATGAAGCAGTGGGGCGCACCATAAATCCAGTGAATGGGGCAGTGGGGCTGCTCTGGACTGCCAACTGGCACCTCTGCCAGTTAGCAGTCGAGCAAGTGCTCCGAGGCGGTCGTGCCGTGTTGACTCCACTGCCTCATGAGACTGAGGCCTTTGAAGATTGTTCTAGTAATCATCAGCAAGTCAGCATCATGGGGATTTCGGGGACAAGGATGCTCAAGAGAAAGGTCGGTTTCGATGGCGTCAAGAATGATTTTGAAGCACAAGTAGCTGGTGATGGAAGGGGTCTCCAAGCAAAGAAGCAATGTGCCGGGACACCAAACGAGGAATCAAGACCACCACGTTGGGAAGTAGCTCACTGGTACCAAGATACTAATAAGAATGGTTAA 591 0.5178 MSCNGCRVLRKGCSEDCMLRHCLMWIQNPQAQAHATVFVAKFFGRAALMSFLSSVPTNQRSALFQSLLYEAVGRTINPVNGAVGLLWTANWHLCQLAVEQVLRGGRAVLTPLPHETEAFEDCSSNHQQVSIMGISGTRMLKRKVGFDGVKNDFEAQVAGDGRGLQAKKQCAGTPNEESRPPRWEVAHWYQDTNKNG* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0488 196 MobiDBLite consensus disorder prediction 160 196 - -
Dod06g0488 196 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Dod06g0488 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 177 - -
Dod06g0488 196 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Dod06g0488 196 PANTHER LOB DOMAIN PROTEIN 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0488 Dod-Chr6 5958437 5959778 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0488 1 114 AS2 family AT3G49940 74.561 4.02e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod06g0488 LOB 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0488 - - gmx:100816269 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0488 06 5958437 5959778 Dod06g0488 06 5958437 5959778 ECH
Dod08g2014 08 47363931 47366028 Dod06g0488 06 5958437 5959778 ECH
Dod02g0782 02 10160588 10161375 Dod06g0488 06 5958437 5959778 PCT