Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0477 ATGATTTTTATGTTCATTGAATTCGATTTGGATGATTGCTTTTTCCCCTATAGGCAATATGATAGAGATTTAATGGGCGGGGATCAAGAAAGTGAATTATCAACTGATGTGGCAACTGGGGACTCTCTAGTTACTGACTTGACTTCGCAAATGGGAAGGTCCCAGCTCTTGCAAGAACTCGACAAAAAGCCACCTGGACTCACTCAGGAGGCCTTGGACTGTTTGCATATGGAGGTTTTTAGCAGCAGGGATACAGGATTGGAGTCCAGAGAACTGCAGGATTGTGGCATATGCTTGGAATCTTTTGTGGATGGAGACGAGTTGATACGTTTGCCATGTGGACATAAATTTCATTCTGCATGTTTGGATCCTTGGGTTCGCTCTTGCGGAGACTGTCCCTACTGTCGAAGAGGTATAGTTGTAGATAGTAACTTAAAGCAGAAAGAGGCTGAGTAG 456 0.4386 MIFMFIEFDLDDCFFPYRQYDRDLMGGDQESELSTDVATGDSLVTDLTSQMGRSQLLQELDKKPPGLTQEALDCLHMEVFSSRDTGLESRELQDCGICLESFVDGDELIRLPCGHKFHSACLDPWVRSCGDCPYCRRGIVVDSNLKQKEAE* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0477 151 SMART FANCL_C_2 91 144 - -
Dod06g0477 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 28 141 - -
Dod06g0477 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 140 IPR013083 -
Dod06g0477 151 SMART ring_2 95 135 IPR001841 -
Dod06g0477 151 CDD RING-H2_PA-TM-RING 94 136 - -
Dod06g0477 151 SUPERFAMILY RING/U-box 94 142 - -
Dod06g0477 151 PANTHER SI:CH211-59O9.10 28 141 - -
Dod06g0477 151 ProSiteProfiles Zinc finger RING-type profile. 95 136 IPR001841 -
Dod06g0477 151 Pfam Ring finger domain 94 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0477 Dod-Chr6 5867851 5871044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0477 50 140 C3H Transcription Factor Family AT1G49850 56.044 1.16e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0477 - - lang:109335003 213.386