Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0446 ATGGCATCAGCATCTTGTGTCAGTAAGAGCCCCTTACCCATGAAAGAGGCATCAGCAGCAGCTTCAAGCTATTGTGTATACCCTCCCCCTCTTGCAAGATATGAGGATGTTGCAAACGACCACTCGCTCTTCATGTCTACCTTGGAGAAACTCCATGCTTCTTTGGGTACCAAGTTCATGATTCCTATTATTGGGGGAAGAGAATTGGATTTGCATCGCCTCTTTGTTGAAGTAACTTCTCGTGGAGGTATTGAGAAGATAATTAAAGAGAGGAAATGGAAAGATGTAACTGCAGTTTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTTCTGCGGAAGTACTATGCTTCATTGCTTTTTCATTATGAACAACTCTACTATTTTAAAGCACCTGGATGGACCCCTACTGCTTCCAGTGCTCTGCAGAGTCAGTCAACCATTCCAGTTCCATCTCAAAAGACACAGTTTTTGCAACCTTCGTCAGGATTTCAATCAACTGTCTTTCGACAGCCAAGTGTTAATGCTGCTGAATTGCCCCAAGCCATGACAGTATCTTCAGCAGGGTCCCCGGTCATTGGGGTCATTGATGGGAAGTTTGAAAGTGGGTATCTAGTTACTGTGACAGTAGGTTCAGAGAAACTTAAGGGTGTGCTTTATCAGGCTCCACAAAACCCCAATTTGCCAGCATCCCATCACAGTGGTTTGGTCAATAACAATAATGCCTCTGCTCAGTTCGGTCGTCGCCGCCGCAGAAAGAAGTCAGAAATTAAGCGGAGAGATCCTGCCCATCCAAAACCCAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGCAGCATGCAAGGACTAAAACCACTTAA 864 0.4433 MASASCVSKSPLPMKEASAAASSYCVYPPPLARYEDVANDHSLFMSTLEKLHASLGTKFMIPIIGGRELDLHRLFVEVTSRGGIEKIIKERKWKDVTAVFNFPSTATNASFVLRKYYASLLFHYEQLYYFKAPGWTPTASSALQSQSTIPVPSQKTQFLQPSSGFQSTVFRQPSVNAAELPQAMTVSSAGSPVIGVIDGKFESGYLVTVTVGSEKLKGVLYQAPQNPNLPASHHSGLVNNNNASAQFGRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARTKTT* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0446 287 SMART ARID_2 35 125 - -
Dod06g0446 287 ProSiteProfiles ARID domain profile. 38 129 IPR001606 GO:0003677
Dod06g0446 287 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 285 - -
Dod06g0446 287 SUPERFAMILY ARID-like 36 137 IPR036431 GO:0003677
Dod06g0446 287 Pfam ARID/BRIGHT DNA binding domain 41 125 IPR001606 GO:0003677
Dod06g0446 287 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 285 - -
Dod06g0446 287 Gene3D - 18 137 IPR036431 GO:0003677
Dod06g0446 287 SMART bright_3 39 130 IPR001606 GO:0003677
Dod06g0446 287 MobiDBLite consensus disorder prediction 227 246 - -
Dod06g0446 287 MobiDBLite consensus disorder prediction 227 273 - -
Dod06g0446 287 CDD ARID_HMGB9-like 40 125 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0446 Dod-Chr6 5642320 5646974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0446 1 285 ARID Transcription Factor Family AT1G04880 58.389 3.53e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dod06g0446 ARID 7.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0446 - - gmx:100783284 434.876