LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod06g0435	ATGTGTCTCCAGATCCTATGTTTATTTCTGTTGAGTACACCCTTCAGTGAAGTATCATCAGAAGTAAATGCAACAACTTATGAATCTGATAGAGTAGTCAATCTTCCTGGCCAGCCCTCAAGCCCGGCAGTCTCACACTTTTCAGGTTATATCACTGTCAATGAAGACCATGGGAGGGCCCTTTTCTATTGGTTCTTTGAAGCTCAATCTGAACCCTCCAAGAAGCCCCTCCTTCTCTGGCTCAATGGAGGACCCGGATGCTCCTCTATTGGGTATGGTGCAGTTGTTGAGATAGGGCCTCTTACAATCAACCAAAATGGGGATGGTCTACATTTCAACACTTACTCATGGAATCAAGAAGCAAATTTGTTATTTGTAGAGTCCCCTGTTGGAGTTGGTTTTTCTTACACTAACACATCTTCTGATCTCACCACATTGGAGGATAACTTTGTAGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTACAACTATTCCCAGAGTTTAAATCTCGGGACTTTTTTATAGCAGGAGAAAGCTACGCTGGCCACTATATCCCTCAGCTTGCAGAGCTAGTCTTTGATCGAAACAAATTAGATAGAAACAAATACCCTCTTATTAATCTCAAAGGTTTTATCGTAGGGAATCCAGAAACTGATGATTACTATGACAATAAAGGCCTACTAGAATATGCATGGAGCCATGCAGTAATATCAGATCAGCAATACGACAAAGCCAAACAAGTATGTGATTTTAAAAAAATTGAATGGTCTAATGAATGCAATCAGGCCATGAACGAAGTCTTCCAAGATTACTCAGAAATTGACATTTACAACATTTATGCCCCGGCATGTCGTCAAAATAGCACATCCTCAGTAGCTGATGATAGTAAGAATAATGGCCCAGAATCACTCACAAAGGTGAGAAACAATTACAGGGCAAGGATGAGAATTTTTGGGGGCTATGACCCGTGTTATTCAACATATGCAGAAGAATACTTTAATAGACTGGATGTTCAGTCCTCTTTTCATGCAAACATTAAGGGAGGAAAGATTAATGTAGCATGGAAAGTTTGCAATAATTCCATATTGAGGACTTACAACTTCTCTGTTTTTTCGATCCTGCCTATCTACACCAAACTCATCAAGGGTGGGCTTAAGATATGGATTTATAGTGGAGACACAGATGGCAGAATACCAGTGACAGGGACACGATACTGTGTTGAGGCTCTGGGATTACCTCTCAAGTCTAGCTGGCAGCCTTGGTACCATGATAATCAGGTTGGTGGAAGGACAGTGGAATATGAAGGGGTGACATATGTGACAGTGAGAGGAGCAGGCCACTTGGTACCACTCAACAAGCCCAGTGAGGCTCTCTCCCTTATCCACTCTTTCCTAACAGGAGACCGTCTCCCCACTCGCCACTAA	1428	0.4223	MCLQILCLFLLSTPFSEVSSEVNATTYESDRVVNLPGQPSSPAVSHFSGYITVNEDHGRALFYWFFEAQSEPSKKPLLLWLNGGPGCSSIGYGAVVEIGPLTINQNGDGLHFNTYSWNQEANLLFVESPVGVGFSYTNTSSDLTTLEDNFVAEDAYNFLVNWLQLFPEFKSRDFFIAGESYAGHYIPQLAELVFDRNKLDRNKYPLINLKGFIVGNPETDDYYDNKGLLEYAWSHAVISDQQYDKAKQVCDFKKIEWSNECNQAMNEVFQDYSEIDIYNIYAPACRQNSTSSVADDSKNNGPESLTKVRNNYRARMRIFGGYDPCYSTYAEEYFNRLDVQSSFHANIKGGKINVAWKVCNNSILRTYNFSVFSILPIYTKLIKGGLKIWIYSGDTDGRIPVTGTRYCVEALGLPLKSSWQPWYHDNQVGGRTVEYEGVTYVTVRGAGHLVPLNKPSEALSLIHSFLTGDRLPTRH*	476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod06g0435	475	Pfam	Serine carboxypeptidase	36	467	IPR001563	GO:0004185\|GO:0006508
	Dod06g0435	475	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	4	473	IPR001563	GO:0004185\|GO:0006508
	Dod06g0435	475	Gene3D	-	374	468	-	-
	Dod06g0435	475	ProSitePatterns	Serine carboxypeptidases, histidine active site.	438	455	IPR033124	GO:0004185
	Dod06g0435	475	Gene3D	-	325	363	-	-
	Dod06g0435	475	SUPERFAMILY	alpha/beta-Hydrolases	28	471	IPR029058	-
	Dod06g0435	475	PRINTS	Carboxypeptidase C serine protease (S10) family signature	113	125	IPR001563	GO:0004185\|GO:0006508
	Dod06g0435	475	PRINTS	Carboxypeptidase C serine protease (S10) family signature	438	451	IPR001563	GO:0004185\|GO:0006508
	Dod06g0435	475	PRINTS	Carboxypeptidase C serine protease (S10) family signature	126	136	IPR001563	GO:0004185\|GO:0006508
	Dod06g0435	475	PRINTS	Carboxypeptidase C serine protease (S10) family signature	162	187	IPR001563	GO:0004185\|GO:0006508
	Dod06g0435	475	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 26	4	473	-	-
	Dod06g0435	475	ProSitePatterns	Serine carboxypeptidases, serine active site.	176	183	IPR018202	GO:0004185
	Dod06g0435	475	Gene3D	alpha/beta hydrolase	26	287	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod06g0435	Dod-Chr6	5557434	5560612	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod06g0435	347	471	Calmodulin-binding Proteins	AT2G22960	31.746	1.15e-14	70.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod06g0435	K16297		-	gmx:100815141	843.188