Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0413 ATGGCGTCGATGCTGCCATACAGCGATGTAGATTCGAGCTTGAGGGGCATGGCCGGTCGTGCCGAGGGTTTCGGCCGCAACTCCCTCGGTGGCCTCCACGGTCCTCTCTTTTTCGTCACCTCCCTCGCAGATGATGGTCCTGGGTCCCTACGTGAAGGATGTCGAAGAAAAGAGCCACTATGGATTGTTTTTGAGCTTTCAGGTACAATTCACCTTTCATCGTACCTGAATGTGTCATCTTACAAGACAATAGATGGCAGAGGACAGAGGATAAAACTAACTGGAAAGGGCTTGAGGCTGAAAGAATGTGAGCACATTATAATATGCAACCTTGAGTTTGAGGGTGGTAGGGGCCATGATGTGGATGGCATTCAAATAAAACCAAATTCTAGGCACATATGGATAGATCGGTGCAGCCTTCGTGATTATGATGATGGTCTTATAGACATTACAAGACAAAGCACAGATATTACTGTATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCCGACCCGACTCATGTTGATGATAGATGCATCCGGGTGACAATTCATCATTGTTTTTTTGATGGAACAAGGCAAAGACACCCTCGTGTGAGATTTGGGAAAGTTCATTTGTACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTTGAATCCCAGGTATACTCTCAGTGCAACATATATGAAGCAGGAGCTAAGAAAAAGACTTTTGAATTTTATACCGAGAAGGCTGCAGATAAGGCAGAGACAAAGTCTGGCATTATAATATCTGAAGGGGACATGCTTCTGAATGGTGCTCAGCCATGCTTACTAACAGAATACAGAGAAGAATCTACGTTCCATCCTAGTGAATATTACCCAACATGGACCATGGAAGCAGCTCAACATTCTCTCAGGGAAATCCTTCAATTATGTACAGGTTGGCAGTCCATTTGTCGGCCAGTAGACCACATGGCCTTTGACTAA 999 0.4454 MASMLPYSDVDSSLRGMAGRAEGFGRNSLGGLHGPLFFVTSLADDGPGSLREGCRRKEPLWIVFELSGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHVDDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQVYSQCNIYEAGAKKKTFEFYTEKAADKAETKSGIIISEGDMLLNGAQPCLLTEYREESTFHPSEYYPTWTMEAAQHSLREILQLCTGWQSICRPVDHMAFD* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0413 332 PANTHER PECTATE LYASE 3 326 - -
Dod06g0413 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Dod06g0413 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Dod06g0413 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Dod06g0413 332 Gene3D - 7 315 IPR012334 -
Dod06g0413 332 PANTHER PECTATE LYASE 18-RELATED 3 326 IPR045032 GO:0030570
Dod06g0413 332 SUPERFAMILY Pectin lyase-like 18 322 IPR011050 -
Dod06g0413 332 SMART amb_all 47 245 IPR002022 -
Dod06g0413 332 Pfam Pectate lyase 75 238 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0413 Dod-Chr6 5330376 5333601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0413 42 328 Polysaccharide Lyase AT3G55140 82.230 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0413 K01728 - gmx:100802068 624.009