Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0391 ATGGTTCTTTCGAACAAGAAGCTCAAACTGAAGCTTAGAGCTGAGTTATCCCAAAACCAGAACAACTCCGAAGCTCTTGATGCTTCTCCTTCGCCTAACTCTGTCAAAACTCTTCTGGACTCTGGCAACCACAAACCCAGATTGTCCAAGAGAGAGAAACGCCGAAAGCTTCGATCTTTGCAGCAACATCAATCCGAACCTGCCCCAGAATCTTCTGATGAAGTCGAAGGGACCAACAACCAAACTGGGCCAGAGGGTTTGAGCAACAAGAAGAAGAACAAGAAGAGGACGAGGGTAGAGGATGTAAATGATTTGGAAGATGGGGCTCTCAAGGATTCCAAGAAATCAAAGAGCAAGAACAAGAAGAAGAAGAAGCAGAAGAAAAAGAAGGCCAGAACTGTGGAGCCAAACGGTTCCAATCATAAAGGGGAAGTGCCAGAGGCTACAGGGTTAAACAAGAGTACTAATACCGCTACCAGTCAAGATGGTGATGATCCTACGAAAGTTTATGTGGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGCAGTTATTTTGAAGGCTGTGGCACCATAACTGAAGTTGATTGCATGTGTTTTCCCGAGAGTGGGAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACTGAAGCAGCAGCAAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTCAAAATCCAACCATATAAAGCAACTCGAGCCATTAAAGTATCAGATTTTGCTCCGGAAATCTTGGAGGGATATGACAGAATATATGTTGGAAATTTGTCATGGGATATAACAGAGGAAGAACTGACGAAATTCTTCTCAAATTGCAACATAACATCCCTACGATTTGGTATGGACAAGGATACTGGAGAATTCCGAGGATATGCCCATGTGGATTTCAGTGATAGCCAGTCGCTAAAAACAGCACTTACATTGGACCAAAAGGTTTTGTATGGGAGACCTGTCAGGATAAGTTGTGCTGTTCCATTGAAGAAAAAACCAGGAATGCATACAAGCTCTACAACTACAACTACAAATAATGGGGTTGATGATGAGAAATCGAGTTCTGTCGGAAGTGGCAAGATGAGGAGGAGGACATGCTATGAGTGTGGTGAGAAAGGACATATTCTGTCAGCATGCCCAAAGAAACAAACTGTCGCTTCAACTTCAACCTGA 1203 0.4323 MVLSNKKLKLKLRAELSQNQNNSEALDASPSPNSVKTLLDSGNHKPRLSKREKRRKLRSLQQHQSEPAPESSDEVEGTNNQTGPEGLSNKKKNKKRTRVEDVNDLEDGALKDSKKSKSKNKKKKKQKKKKARTVEPNGSNHKGEVPEATGLNKSTNTATSQDGDDPTKVYVGGIPYYSTEDDIRSYFEGCGTITEVDCMCFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRAIKVSDFAPEILEGYDRIYVGNLSWDITEEELTKFFSNCNITSLRFGMDKDTGEFRGYAHVDFSDSQSLKTALTLDQKVLYGRPVRISCAVPLKKKPGMHTSSTTTTTNNGVDDEKSSSVGSGKMRRRTCYECGEKGHILSACPKKQTVASTST* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0391 400 SUPERFAMILY RNA-binding domain, RBD 159 243 IPR035979 GO:0003676
Dod06g0391 400 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 69 398 - -
Dod06g0391 400 ProSiteProfiles Zinc finger CCHC-type profile. 376 391 IPR001878 GO:0003676|GO:0008270
Dod06g0391 400 SMART c2hcfinal6 375 391 IPR001878 GO:0003676|GO:0008270
Dod06g0391 400 MobiDBLite consensus disorder prediction 149 164 - -
Dod06g0391 400 MobiDBLite consensus disorder prediction 14 40 - -
Dod06g0391 400 MobiDBLite consensus disorder prediction 344 363 - -
Dod06g0391 400 SUPERFAMILY RNA-binding domain, RBD 259 346 IPR035979 GO:0003676
Dod06g0391 400 MobiDBLite consensus disorder prediction 342 369 - -
Dod06g0391 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 244 IPR000504 GO:0003723
Dod06g0391 400 SMART rrm1_1 168 240 IPR000504 GO:0003723
Dod06g0391 400 SMART rrm1_1 263 334 IPR000504 GO:0003723
Dod06g0391 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 235 IPR000504 GO:0003723
Dod06g0391 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 331 IPR000504 GO:0003723
Dod06g0391 400 MobiDBLite consensus disorder prediction 88 114 - -
Dod06g0391 400 Gene3D - 259 344 IPR012677 -
Dod06g0391 400 Gene3D - 89 250 IPR012677 -
Dod06g0391 400 Pfam Zinc knuckle 374 391 IPR001878 GO:0003676|GO:0008270
Dod06g0391 400 MobiDBLite consensus disorder prediction 62 87 - -
Dod06g0391 400 CDD RRM1_PHIP1 169 240 IPR034361 -
Dod06g0391 400 Gene3D - 352 399 - -
Dod06g0391 400 MobiDBLite consensus disorder prediction 115 131 - -
Dod06g0391 400 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 69 398 - -
Dod06g0391 400 SUPERFAMILY Retrovirus zinc finger-like domains 367 395 IPR036875 GO:0003676|GO:0008270
Dod06g0391 400 CDD RRM2_PHIP1 263 334 IPR034362 -
Dod06g0391 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 338 IPR000504 GO:0003723
Dod06g0391 400 MobiDBLite consensus disorder prediction 14 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0391 Dod-Chr6 5102758 5105002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0391 167 336 Eukaryotic Initiation Factors Gene Family AT2G36660 27.072 1.07e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0391 - - adu:107467708 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0391 06 5102758 5105002 Dod06g0391 06 5102758 5105002 ECH