Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0387 ATGACGATGATGAAGAGAGAAAGAGAAGTTGATAGCATAAGCATGGCCAACTACTTGATGATGCTTTCTCGTGGAAGTGAATTTGATCACCAGAGCAATTACTTGATGATGATGAACTCTTCCAACAACAACAGCAGCAGCAGCAACAACAACCGTGTGTTTGAGTGCAAGACATGTAACAGGCAATTCTCATCGTTTCAGGCACTGGGAGGGCACCGTGCGAGCCACAAGAAGCCAAGGTTGATGGAAGGACCAGGGAGTGAACTGCTTCATGGCTCGCCACCAAAGCCCAAAACGCATGAGTGCTCCATTTGTGGCTTGGAATTTGCAATAGGCCAGGCTTTGGGTGGACACATGAGGCGTCACAGGTCATCAGCAGCTTCAAATGGAAACATGCATAGTCCTACCACCACCACCACTATGATGAGCAATAGTAGTGCTGGCAGTAGTGTTGATAACTCATTAGCAAACGAGAAGAAGAAGAAGAAGGAGGCTAATAATAACAGCAAGAGATCAGCTTTGTTTCTGGATTTGAATCTGACACCATTTGAGAATGATTTGCAAATTTTGAAGATTGGACAACCTACTCCTTTGGTGGATTGTTTCAATTGA 612 0.4477 MTMMKREREVDSISMANYLMMLSRGSEFDHQSNYLMMMNSSNNNSSSSNNNRVFECKTCNRQFSSFQALGGHRASHKKPRLMEGPGSELLHGSPPKPKTHECSICGLEFAIGQALGGHMRRHRSSAASNGNMHSPTTTTTMMSNSSAGSSVDNSLANEKKKKKEANNNSKRSALFLDLNLTPFENDLQILKIGQPTPLVDCFN* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0387 203 MobiDBLite consensus disorder prediction 118 167 - -
Dod06g0387 203 MobiDBLite consensus disorder prediction 70 95 - -
Dod06g0387 203 SUPERFAMILY beta-beta-alpha zinc fingers 52 122 IPR036236 -
Dod06g0387 203 PANTHER ZINC FINGER PROTEIN ZAT12 14 195 - -
Dod06g0387 203 Gene3D Classic Zinc Finger 27 126 - -
Dod06g0387 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Dod06g0387 203 MobiDBLite consensus disorder prediction 124 154 - -
Dod06g0387 203 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Dod06g0387 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Dod06g0387 203 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Dod06g0387 203 PANTHER ZINC FINGER PROTEIN ZAT5 14 195 - -
Dod06g0387 203 SMART c2h2final6 100 122 IPR013087 -
Dod06g0387 203 SMART c2h2final6 54 76 IPR013087 -
Dod06g0387 203 Pfam C2H2-type zinc finger 53 79 - -
Dod06g0387 203 Pfam C2H2-type zinc finger 100 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0387 Dod-Chr6 5077295 5078347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0387 4 200 C2H2 Transcription Factor Family AT3G53600 38.614 1.16e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod06g0387 zf-C2H2_6 8.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0387 - - gmx:100816598 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0387 06 5077295 5078347 Dod01g2650 01 65936482 65938016 ECH
Dod06g0387 06 5077295 5078347 Dod06g0387 06 5077295 5078347 ECH