Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0368 ATGGCGAAGGGAAACCCATCACAGGCAAGGAAGAGAGTGGACGCCGTTGATTCTCGTGCCGCTTCCGTTCTTGTTCGCGCCAAGGATGGCAGTGCTTTCGCCAAATGCGAAGAGTGCAAGAAGGATGTTCCGGTGGCACTCATCAGCATGCACAGTTGCAGCCTTGAAGCCAAAATCAAAATGAATCTCGAGGCCCAGGTTGTTGAACAGCCTTCTGAAGCCAAAAAGCCAGAGAGGAAGAAGCCCAAATCCAAAGAACCAAAGGCAAAGAGGGCCAAAGTTGAGAAGGGGAAGAAGGTCAAGGATCCTAACATGCCAAAGCGTCCTCCCACAGCCTTCTTTGTCTTCTTGGATGACTTTAGGAAATCTTTTAAGGAAGCAAACCCTGATTCAAAGGATGTTAAAAGGGTTGGTAAAGAGGCTGGTGAGAAGTGGAAGTCCATGACTGATGAAGAGAAGAAGCCTTATTTGGATAAGGTTGCTGAGCTTAAGGCAGAATATGAGAAGGCTATGGAAAGCTACAATGCTGCTGCTGCTGAAGAAGAGGAAGAAGGAGAGGGATCTGACAAGTCTGATAAGGAGGAAGCTGCTGCTACAGGAGAAGTAGAAGAGTTAACCGATGAGGAGTAG 630 0.4794 MAKGNPSQARKRVDAVDSRAASVLVRAKDGSAFAKCEECKKDVPVALISMHSCSLEAKIKMNLEAQVVEQPSEAKKPERKKPKSKEPKAKRAKVEKGKKVKDPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDVKRVGKEAGEKWKSMTDEEKKPYLDKVAELKAEYEKAMESYNAAAAEEEEEGEGSDKSDKEEAAATGEVEELTDEE* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0368 209 Coils Coil 157 184 - -
Dod06g0368 209 SMART hmgende2 105 176 IPR009071 -
Dod06g0368 209 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 197 - -
Dod06g0368 209 MobiDBLite consensus disorder prediction 174 209 - -
Dod06g0368 209 MobiDBLite consensus disorder prediction 126 149 - -
Dod06g0368 209 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 106 175 IPR009071 -
Dod06g0368 209 SUPERFAMILY HMG-box 93 175 IPR036910 -
Dod06g0368 209 MobiDBLite consensus disorder prediction 68 110 - -
Dod06g0368 209 CDD HMGB-UBF_HMG-box 106 172 - -
Dod06g0368 209 MobiDBLite consensus disorder prediction 88 105 - -
Dod06g0368 209 Pfam HMG (high mobility group) box 106 175 IPR009071 -
Dod06g0368 209 Gene3D High mobility group box domain 101 177 IPR036910 -
Dod06g0368 209 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0368 Dod-Chr6 4877642 4879428 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dod06g0368 HMG_box 1.3e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0368 K25507 - gmx:100306558 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0368 06 4877642 4879428 Dod06g0368 06 4877642 4879428 ECH