Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0364 ATGCTTGATAATGTGCACCATATTCATGATTTTGTCAACTCAACTTGGGGACTTTGTTCTGCTCTAGGTGGTTGGGTTTCTGGTTTAGTATCTAAACCTTTTAGAAAAAAGGTTGGCCCAGCATTTAATGGTTCTCTTTCAAGGTTGGCTGAGGAAAGAGAAAATTGTTGTTTAGAGTTCATGGATGAATGTATATATATTAGTTCGTCAGAGGATGACCTGGAAGAGATAGAAGATCCAAAGAGGATTCTCCCACAATGGGCTGCTACCAAATGGAATTCAGATAATGGTGGGTGGTCTAGGCAGGATAGTTCTTCAAGAGGGGCAAATACTTCAAATCCTAGCTCTTCTAATGCTAATAATTATTCACAAATCAAGCCTCATACTGAATCTTTGTCCGTCAACAATGCACTGAATCACAGAGTTGCACAGAGAGAAGAACCTTCATATCATACTCAGAATGGAAACACAACTCAGTATCAAACAGTTGATTCCCGAATTTATAATACTTCTGGTGCTGATTATGAGAAAATGTTGTCTCAACAAGCTTTGAAGAGGACTCTTCCATTGACTCTTCAGACATCTGCAACAAGGGCTCCTCCGTCTTCGTCATTTGCACCAGACAGCAGATTAAGTAACTTAAAAGATAACATTAACGGCAGTCAGCTTCTTGATGCATATAGGAATCGTCGACATGGAGTAGGACCTAGCACCATCAGCGACAAGGGGTACATTCGTGGCAATTATAGCAGGGGCAATGATGAAGATCGTTTCATGCATCAAAATGGTGGGATTAGGATTCTTCCTACATCTTTGATGCATGGGAAGTCTATAACCCCACAGTTTGCTAGTTCTAGTGAATCTGCATACCGTTCTGGACCAGGTGATGAACGGGCTTCTGGTAATGACGAGAGACTAATTTATGAGGCAGTGATAGAGGATCTCAGTCAATCAAGAACAGAAGCCAATTTACCTGAAGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCGTTGGCTTGGATGCTTCAGAAGGAAACCCGAAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGCAAGACAATTTCCATGATTGCTCTCATCCTAATGCAGAGGTCACTGCAGTCAAAATCAAAAACAAATGATACATGCAATAATAAAACTGAAGCTTTGAATTTGGATGATGATGAAGATAATGGTTGTGTTGTCGTGGACAAGCTTAAAGAGAATGAAGACTCTGATGATATAAAACCTAGTACTGAACCTTGTAGTTCAACAGGAGCACCAAGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCAAGTGTTCTTCGACAGTGGGCCAGGGAGCTTCAAGACAAAGTCGATGAACGGCAGAATCTTACTGTTATGATTTATCATGGGGGCAGTAGGACAAAAGATCCTGTTGAACTTGCAAAATATGATGTGGTCCTCACAACATACTCTATTGTGACTAATGAAGTTCCAAAGCAACCGTTGGTTGAGGAGGATGATATTGATGACAAAAATGGGGAAAGATTTGGGTTATCCTCTGAATTCTCTACTAGTAAAAAAAGGAAACAGTCATTCAATGGAAGTAAGAAGAGTAAAAAGGGTAGAAAGGGAATTGACAGTTCTTCTATCGATTGTGCTTCTGGTCCTCTTGCGAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTCAGGGCCAAAAGAAGGTGGTGCTTATCTGGAACTCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCGTATGCTGTATATAAGTCATTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTATCCAAGGGTACAAAAAGCTTCAAGCAGTTCTCAGAGCTATTATGCTTCGCCGCACAAAAGGAACTTTGATCGATGGGAAGCCAATAATCAATTTACCCCCTAAAACAATTCAGCTAACAAAGGTGGCTTTCTCCAGTGAGGAGCGGGCCTTCTACATGAAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCGGGCACAGTGAATCAAAACTATGCAAATATTCTATTAATGCTTTTACGTCTCCGTCAGGCTTGTGACCATCCGCGTCTTGTTAAAGATTATTATTCTGATCCTGTTGGGAATACATCTGTAGAAATGGCAAACAAGCTTCCGAGGGAGATGCTGATTAATCTATTTAATAGTTTGGAAACAACCTTTGCCATATGCATTGTTTGCAATGATCCACCTGAAGACCCTGTTGTTACAAGGTGTGGCCATGTCTTCTGTTATCAATGTGTTTCAGATTATTTGACCGGTGATGATAATACATGCCCTGCAGTTGATTGTAAAGCAACAATTAATGATGATGATGTATTCTCCAAAGCTACATTGAGGAGTTGCATCTCTGATGATCCCGGTGGTAGTAGTTCCATAAATTCGGATGATTTTGATCATTCACTAGTGCAACAGAGGGAATACAGTTCGTCCAAAATCAAAGCTGTCCTTGAGATTCTGCAGTCAAATTGTAAATTGAAGACTCCTAGTTCTGGCTTGCAAAATTCCTCTGGAAGCTCTAGAGGTTCACCGTCTTCTGATGATTCATATATTGAAAACTGCAACTCAGATGCTAGGGTAACAAAGCACACAAGAAAATATTCAGAGCCTACAACTGAAGGACCAATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGACATCATTGAAACAAGCTCGTATTCGATACAGGAGACTTGATGGTCGGATGACTTTGCTCGCAAGGGACAAAGGTGTTAAGGATTTCAATACTAATCCTGAGATAACTGTCATGCTGATGTCCCTAAAAGCTGGAAATCTTGGTTTGAATATGGTTGCTGCATGTCATGTCATTCTTTTGGATCTGTGGTGGAATCCGACAACTGAAGATCAAGCAGTTGACCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGCTCACTATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGAGGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGAGCATGCTGGCAGTTCTGCCACTCGCCTTACATTGGATGATCTGAAATATCTTTTCATGGTCTAG 3258 0.4091 MLDNVHHIHDFVNSTWGLCSALGGWVSGLVSKPFRKKVGPAFNGSLSRLAEERENCCLEFMDECIYISSSEDDLEEIEDPKRILPQWAATKWNSDNGGWSRQDSSSRGANTSNPSSSNANNYSQIKPHTESLSVNNALNHRVAQREEPSYHTQNGNTTQYQTVDSRIYNTSGADYEKMLSQQALKRTLPLTLQTSATRAPPSSSFAPDSRLSNLKDNINGSQLLDAYRNRRHGVGPSTISDKGYIRGNYSRGNDEDRFMHQNGGIRILPTSLMHGKSITPQFASSSESAYRSGPGDERASGNDERLIYEAVIEDLSQSRTEANLPEGVLSVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISMIALILMQRSLQSKSKTNDTCNNKTEALNLDDDEDNGCVVVDKLKENEDSDDIKPSTEPCSSTGAPSRKRPAAGTLVVCPASVLRQWARELQDKVDERQNLTVMIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPLVEEDDIDDKNGERFGLSSEFSTSKKRKQSFNGSKKSKKGRKGIDSSSIDCASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIQLTKVAFSSEERAFYMKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYYSDPVGNTSVEMANKLPREMLINLFNSLETTFAICIVCNDPPEDPVVTRCGHVFCYQCVSDYLTGDDNTCPAVDCKATINDDDVFSKATLRSCISDDPGGSSSINSDDFDHSLVQQREYSSSKIKAVLEILQSNCKLKTPSSGLQNSSGSSRGSPSSDDSYIENCNSDARVTKHTRKYSEPTTEGPIKAIVFSQWTSMLDLVETSLKQARIRYRRLDGRMTLLARDKGVKDFNTNPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIKDTVEDRILALQEEKRKMVASAFGEEHAGSSATRLTLDDLKYLFMV* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0364 1085 MobiDBLite consensus disorder prediction 883 908 - -
Dod06g0364 1085 Gene3D - 526 674 IPR038718 -
Dod06g0364 1085 Gene3D - 430 516 IPR038718 -
Dod06g0364 1085 MobiDBLite consensus disorder prediction 194 213 - -
Dod06g0364 1085 SMART ring_2 779 817 IPR001841 -
Dod06g0364 1085 MobiDBLite consensus disorder prediction 281 302 - -
Dod06g0364 1085 MobiDBLite consensus disorder prediction 416 439 - -
Dod06g0364 1085 MobiDBLite consensus disorder prediction 144 163 - -
Dod06g0364 1085 CDD SF2_C_SNF 928 1037 - -
Dod06g0364 1085 MobiDBLite consensus disorder prediction 511 556 - -
Dod06g0364 1085 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 104 1084 - -
Dod06g0364 1085 Pfam SNF2-related domain 336 741 IPR000330 GO:0005524|GO:0140658
Dod06g0364 1085 SMART ultradead3 329 642 IPR014001 -
Dod06g0364 1085 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 625 IPR014001 -
Dod06g0364 1085 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 104 1084 - -
Dod06g0364 1085 SMART helicmild6 944 1027 IPR001650 -
Dod06g0364 1085 MobiDBLite consensus disorder prediction 94 124 - -
Dod06g0364 1085 SUPERFAMILY RING/U-box 776 839 - -
Dod06g0364 1085 ProSitePatterns Zinc finger RING-type signature. 794 803 IPR017907 -
Dod06g0364 1085 CDD DEXDc_SHPRH-like 333 663 - -
Dod06g0364 1085 Pfam Helicase conserved C-terminal domain 931 1027 IPR001650 -
Dod06g0364 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 767 831 IPR013083 -
Dod06g0364 1085 Gene3D - 678 1084 IPR027417 -
Dod06g0364 1085 Gene3D - 304 397 IPR038718 -
Dod06g0364 1085 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 914 1080 IPR001650 -
Dod06g0364 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 663 IPR027417 -
Dod06g0364 1085 Pfam Zinc finger, C3HC4 type (RING finger) 779 815 - -
Dod06g0364 1085 ProSiteProfiles Zinc finger RING-type profile. 779 815 IPR001841 -
Dod06g0364 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 672 1084 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0364 Dod-Chr6 4837261 4848369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0364 61 985 RAD5 or RAD16-like Gene Family AT1G50410 54.304 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod06g0364 SNF2_N 1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0364 - - lang:109335781 1634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0364 06 4837261 4848369 Dod06g0364 06 4837261 4848369 ECH