Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0343 ATGTCGGAGTCACCGTCTCAGCCTCCAACACCACCTCCCTCCACCGAAACGCCAGGGACGTACTGGTGCTACCACTGCGAGAAGCGCGTCTGCGTCGAGACACTTCCAAACCTCCCTGATGTAATCTGCGGCGACTGCAAGAACGGCTTCGTCGAATCCATCTCCACACCCTCTCTCGCCTCCGCCGCTGCCGCGTCCTCTGACGACGACCCGTACTTCGGCTCCCACTTACTCCAGGTCCTCCGGCTAATCGCTCAGTCGGCGCGTGACGACGACGAGTCTCCTCCTCCTCCTCCGCCGAACTTCTCGCCGGAGACCGATTTACTCAGGATCGAGTTCAGCGGCTGGGACAACGACGAAGACGACGATGAAGAAGAAGAAGACGACGACGAAGACCATAACGAAAACGGCGTCGAGGTTCACAACGACGTCGAAGAGCACCAAAACGCCGTTGAGGAGCGAGAAGATCGGATCGGAAGCGAGGATCCGCACGGCGACGGCGAGGATCTGAGGCGGAGGAGGCGCGAGCTGCTCCGCCTCCGAATTATGGATTTGGCGACCCGAACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCCGATATCCTGATGGGCCTGGAGGACAATTCCATCGAGCTCCGGCTCCAGCTGCCGGATTCCGACCGCTACGTCGGAAACCCTGAGGACTATGTCGACGCCGCGGAGTACGAGGCGCTGCTGCAGACGCTGGCGGAGAGCGACGCTGGGAGCGGGAGGAGGGGAGCTCCGCCGGCGGCGAAGTCGGCGGTGGAGGCGCTTCCGACGGTGGAGATCGCGTCGGAGAGCGAGGCAGTGCTTTGCGCCGTTTGTAAGGATATGGTTGGGGTTGGTGACGTGGCGAAGGGGTTGCCGTGTGGGCACGAGTATCATGGAGACTGCATTGTTCCTTGGTTGGGTTCGAGAAATTCTTGCCCTGTTTGCAGGTTCGAGCTACCTACTGATGATGCGGAGTATGAGGAGGATAGGAAGAAGAAGAGGGTGCTCAATATTAATAATGGTGCTTCGGGTTCCGGTGGAGCTGGCGCTGGCGGCGGCGGCACCTTGTCGGGTTGA 1092 0.6062 MSESPSQPPTPPPSTETPGTYWCYHCEKRVCVETLPNLPDVICGDCKNGFVESISTPSLASAAAASSDDDPYFGSHLLQVLRLIAQSARDDDESPPPPPPNFSPETDLLRIEFSGWDNDEDDDEEEEDDDEDHNENGVEVHNDVEEHQNAVEEREDRIGSEDPHGDGEDLRRRRRELLRLRIMDLATRTRSMRNRILDWADILMGLEDNSIELRLQLPDSDRYVGNPEDYVDAAEYEALLQTLAESDAGSGRRGAPPAAKSAVEALPTVEIASESEAVLCAVCKDMVGVGDVAKGLPCGHEYHGDCIVPWLGSRNSCPVCRFELPTDDAEYEEDRKKKRVLNINNGASGSGGAGAGGGGTLSG* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0343 363 MobiDBLite consensus disorder prediction 135 170 - -
Dod06g0343 363 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
Dod06g0343 363 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 35 352 - -
Dod06g0343 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 327 IPR013083 -
Dod06g0343 363 MobiDBLite consensus disorder prediction 342 363 - -
Dod06g0343 363 MobiDBLite consensus disorder prediction 88 107 - -
Dod06g0343 363 MobiDBLite consensus disorder prediction 116 170 - -
Dod06g0343 363 Pfam Zinc finger, C3HC4 type (RING finger) 280 320 - -
Dod06g0343 363 SUPERFAMILY RING/U-box 275 327 - -
Dod06g0343 363 ProSiteProfiles Zinc finger RING-type profile. 280 321 IPR001841 -
Dod06g0343 363 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 35 352 - -
Dod06g0343 363 SMART ring_2 280 320 IPR001841 -
Dod06g0343 363 MobiDBLite consensus disorder prediction 116 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0343 Dod-Chr6 4677969 4679344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0343 190 337 C3H Transcription Factor Family AT5G01980 45.161 2.37e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0343 - - adu:107467499 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0343 06 4677969 4679344 Dod06g0343 06 4677969 4679344 ECH