Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0330 ATGTCGTCCGTCGAGGTCGCCGCCGGCGGATCTAAGCCGTACTTCTGCCATGTGTGCAGCCAGAGAATCACCGTCTCCGACGAATCGGAGCCTCTCTGCCCGGTCTGCCTCCAAGGCTTCGTCGAAGAATACACCGATCCCAACCCTAACGCTAACCCTAATTTCCCCTTCGGTTTCAACTTCGATCCCACTTCCGATCCTCATTTCCCCTTCCACCCCTTATCCCTCCTCCCTCTCTTGCTTTCCTCCGCCTCCACCACCACCATCGACCTCCAGAACCCTCGCATCTTCTCTACCTCATCCGGATCCGGGACCCGACCCGATTTCCCCGAATCCGAGATGTTCGACCCGTTCCTCTTCCTGCAGAACCACCTTCAAGGCCTTCGCGCCGATGGAGCGAACGTTCAGTTCGAGATCAACCATCCTTCGGAGCCAGGGTTTCGCCTGCCGGCGAACATCGGCGATTACTTCCTCGGGCCCGGCCTCGAGCAGTTGATCCAGGAGCTCGCCGAGAACGATCCCAACCGTTACGGGACGCCGCCGGCGTCGACAACCGCCGTAGAGAATCTCCCGACGGTGACCGTAGACGACGAGCTGCTGAACTCGGAGCATAACCAGTGCGCGGTTTGCCATGACGAGTTCGAGAAGGGTTCGCAGGTGAAGCAGATGCCGTGCAAGCACGTGTACCACGATGAGTGCTTGCTTCCGTGGCTTCAGCTGCATAATTCTTGTCCTGTTTGCCGGTATGAGTTGCCCACTGACGACCCTGATTATGAGAACCGGACGCGCAGTGGGAACGGTGGTGATGGGTCCAGGTCTGGCGGCGGTGGCAGTGGTGGTGATGGTGGTGGTGGCGGCGGTGGAGAGGGAATAGAACACCTGTTCAGAGGACTTTTAGGATATCTTTACGGTATCCTTTTGGTGCAAGTGGGTCTGCTCAGGAAGGTGGCGAAAGAGGATGGGGAACTAGGCAAGAAGATTTGGATTGAAAAACTTATGATTGGTAAATGGTAA 1014 0.571 MSSVEVAAGGSKPYFCHVCSQRITVSDESEPLCPVCLQGFVEEYTDPNPNANPNFPFGFNFDPTSDPHFPFHPLSLLPLLLSSASTTTIDLQNPRIFSTSSGSGTRPDFPESEMFDPFLFLQNHLQGLRADGANVQFEINHPSEPGFRLPANIGDYFLGPGLEQLIQELAENDPNRYGTPPASTTAVENLPTVTVDDELLNSEHNQCAVCHDEFEKGSQVKQMPCKHVYHDECLLPWLQLHNSCPVCRYELPTDDPDYENRTRSGNGGDGSRSGGGGSGGDGGGGGGGEGIEHLFRGLLGYLYGILLVQVGLLRKVAKEDGELGKKIWIEKLMIGKW* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0330 337 Pfam zinc-ribbon 13 44 IPR039525 GO:0061630
Dod06g0330 337 PANTHER OS06G0101300 PROTEIN 9 287 - -
Dod06g0330 337 SMART ring_2 207 247 IPR001841 -
Dod06g0330 337 SUPERFAMILY RING/U-box 186 256 - -
Dod06g0330 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 287 - -
Dod06g0330 337 CDD RING-H2_RNF126_like 206 248 - -
Dod06g0330 337 Pfam Ring finger domain 205 248 IPR001841 -
Dod06g0330 337 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Dod06g0330 337 MobiDBLite consensus disorder prediction 255 285 - -
Dod06g0330 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 254 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0330 Dod-Chr6 4577006 4578205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0330 151 263 C3H Transcription Factor Family AT5G01980 47.788 1.04e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0330 K11982 - lja:Lj5g3v2258550.1 383.645