Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0326 ATGGAGAACGACACCGCCGCCAGCAACAATGGCAACGCCGCCGCGAAAGTGGGTTCAGGGGGAATCGGAGGGAAATCGAACAACCACAGCGATGAAGAGGAGCGTTCCAATTTGAACGGTGAGGATCACGTGATGATGGCGGAGCAAGATGAAGAAGATGAAGAAGAAGGAGCGGATGGAAACGGTGAAGGGGAACCAACTGGATCTGCAGGAGCGAATCCTCATCGGCAACCTTCTAGAACCCCTTTCACCAATCTCAGCCAGGTCGATGCTGACCTGGCCCTCGCCCGAACCCTACAGGAACAGGAAAGGGCGTACCTGATGTTCAGAATGAATAATGAAGGAAGTGACTATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGATGATGCAGATGATTTTGGTGATCTACATGATGGGACTGATGTGGATGTGGATGAGGATGATGATGATGATGATGAGGATGATGATGATGGGGAGGAGGAATATGAGAATGAAGATGCATTTGATGTTCATGCTCATGCCGGTGCTGGAGAACATGATAATCCTAGCATTGAATTTGATCCAGATTTATTTTCAAGTGATGAAGACTATGCGAGGGCATTACAAGAGGCTGAAGAGAGGGAAATGACAGCTAGACTCCTGGCTCTGGCTGGGATAAATGATCGGGAGGCTGAGGACACAGAGGACCATGGTGCTAATTCTCAGGATGCATGGGAAGATGTTGATCCAGATGAACTTTCATATGAGGAGCTGCTGGCATTGAGTGAAGTAGTTGGAACTGAGAGCAGAGGCCTTTCGACTGATACTATTGCCGGTCTGCCTTCAATCAAGTACAAAACTGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTCATTTGTCGGATGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCTTGCAAACATCTGTATCATCCTGAGTGCATCAACAATTGGTTGAAAATAAACAAGGTTTGTCCTGTTTGCAGTACTGAGGTATCTGCTTCTGGGAGCAGCTAG 1029 0.4762 MENDTAASNNGNAAAKVGSGGIGGKSNNHSDEEERSNLNGEDHVMMAEQDEEDEEEGADGNGEGEPTGSAGANPHRQPSRTPFTNLSQVDADLALARTLQEQERAYLMFRMNNEGSDYGSWEGGSYLHDDADDFGDLHDGTDVDVDEDDDDDDEDDDDGEEEYENEDAFDVHAHAGAGEHDNPSIEFDPDLFSSDEDYARALQEAEEREMTARLLALAGINDREAEDTEDHGANSQDAWEDVDPDELSYEELLALSEVVGTESRGLSTDTIAGLPSIKYKTGSDQHGSNDSCVICRMDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0326 342 MobiDBLite consensus disorder prediction 27 45 - -
Dod06g0326 342 MobiDBLite consensus disorder prediction 114 168 - -
Dod06g0326 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 339 IPR013083 -
Dod06g0326 342 SMART ring_2 292 332 IPR001841 -
Dod06g0326 342 MobiDBLite consensus disorder prediction 46 61 - -
Dod06g0326 342 MobiDBLite consensus disorder prediction 1 15 - -
Dod06g0326 342 CDD RING-H2_PA-TM-RING 292 332 - -
Dod06g0326 342 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 32 341 IPR043312 -
Dod06g0326 342 MobiDBLite consensus disorder prediction 222 238 - -
Dod06g0326 342 MobiDBLite consensus disorder prediction 1 87 - -
Dod06g0326 342 Pfam Ring finger domain 290 332 IPR001841 -
Dod06g0326 342 MobiDBLite consensus disorder prediction 72 87 - -
Dod06g0326 342 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 32 341 - -
Dod06g0326 342 MobiDBLite consensus disorder prediction 136 166 - -
Dod06g0326 342 SUPERFAMILY RING/U-box 283 337 - -
Dod06g0326 342 MobiDBLite consensus disorder prediction 222 244 - -
Dod06g0326 342 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0326 Dod-Chr6 4558380 4563012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0326 74 236 C3H Transcription Factor Family AT3G19910 49.390 1.51e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0326 K19045 - gmx:100306465 506.138