Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod06g0286 | ATGATGGATTTCGATGAGTATGAGTATCTAGAGAAAGCAGTTGAGAACCCTGAACTTAACAAGGAGAAGGAAACCGCTAATGGTGGGAATGGAGCTGTGAAGTCTGAAGAGAGAGGCCATAGTAGGAGTTCCAGGCATAAGGATGATGGTGGTGGTGATGATGATGATGATGTTGATGTTGATCACCGCTCCAAGCCTTTGAAATCTGGGGATGGTTCTCACGATCATGACAGGCACAAACAACGAGGCTCGTCCCGTCATCGCTCACGGTCCAGAGATCGTGACAAGGAGAAGGATGAGCACAGAAGCTCTAGGGGGAGTAGTGATAGGAAGAAGAGAGATAGGGACAGAGATGATGAGGACAAGTCTGGAAAGGAGAGAGACAGAGAACGGGAACGTGGCCATGAAAGGGAAAGGAGGGTCCGCGGGAGTGAGAGTGAAAGGGAAAGGGAGAAAGAGAGCTCAAGGCGAAGCAGCAGTAGATCTGAAAGGCATCAAAGTGATCCTGATGGCAGAGACAGAGAAAGGAGCCGTGACAGGGAGCATAGGGTTAGAGAAAGAAGCCGGGATAAGGATTACAGAGACAGCGAAAGGGTGAGGGAATCAAGGGAGCACGATAGAGAAAGCAGACGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCGGATGAGAGAGATGTGTATGAGTTCTTTTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCGAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTACCCATGGCTATAGCACTTTCTGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCTGAAGCAGAAAAGAATTTAGTTCAGTCCACAGCATCTGTCGCTAGTGGACCCGGTGGACTTATAGGTCCATATTCTGGGGGCGCAAGAAGGCTGTATGTTGGCAATCTGCATTTCAATATGACCGAAGCCGATCTTCGTAGGGTGTTTGAAGCATTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTCGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTCGTGCAGTTTGCTCGCCTTGAAGATGCAAGAAATGCCCAGAGCTTGAATGGTCAATTGGAGATTGGCGGCAGGACAATCAAGGTATCAGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGGAATACTGGTGATTTTGATGACGATGAAGGTGGTGGCTTGTCCCTGAATGCTAGTTCTCGGGCACTATTGATGCAGAAGTTGGATCGCAGTGGCGCTTCATCTAGCATGACTGGTTCCCTTGGTAACTCAGTTGTCAACAACACAGGACTCAATCTCCAAGCAACAGGAAACATAACAACAGCAGCTCTTCTGGGAGCTGCACCAGTGGTTTCTCCCGTTTCTTCTGCTTCTACAGTATCTGGATTGCCAGGTGGAGGTCTTCAAGTTCCCACAGCTACAATTCCATCTATCGATACAATTGGTGTTCCAAGTGGATGCTTACTGTTAAAGAATATGTTTGATCCCAAAGATGAGGAACCGGATTTTGATTTGGATATCAAAGAAGATGTTGAAGCAGAATGCTCAAAGTTTGGGAAGTTAAAACACATATATGTTGACAAGAATAGTGCTGGTTTTGTCTTCTTACGATTTGAAAATACTCAATCCGCAATAAGTGCGCAGCGGGCCTTGCATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCCCAGGCATATGAGGATAAATTCCCAGACAGCAGATGA | 1860 | 0.4672 | MMDFDEYEYLEKAVENPELNKEKETANGGNGAVKSEERGHSRSSRHKDDGGGDDDDDVDVDHRSKPLKSGDGSHDHDRHKQRGSSRHRSRSRDRDKEKDEHRSSRGSSDRKKRDRDRDDEDKSGKERDRERERGHERERRVRGSESEREREKESSRRSSSRSERHQSDPDGRDRERSRDREHRVRERSRDKDYRDSERVRESREHDRESRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVASGPGGLIGPYSGGARRLYVGNLHFNMTEADLRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLDRSGASSSMTGSLGNSVVNNTGLNLQATGNITTAALLGAAPVVSPVSSASTVSGLPGGGLQVPTATIPSIDTIGVPSGCLLLKNMFDPKDEEPDFDLDIKEDVEAECSKFGKLKHIYVDKNSAGFVFLRFENTQSAISAQRALHGRWFAGKMITASFMVPQAYEDKFPDSR* | 620 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod06g0286 | 619 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 125 | 617 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Dod06g0286 | 619 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 241 | 300 | IPR000504 | GO:0003723 | |
| Dod06g0286 | 619 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 337 | 406 | IPR000504 | GO:0003723 | |
| Dod06g0286 | 619 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 549 | 601 | IPR000504 | GO:0003723 | |
| Dod06g0286 | 619 | Gene3D | - | 329 | 438 | IPR012677 | - | |
| Dod06g0286 | 619 | MobiDBLite | consensus disorder prediction | 88 | 230 | - | - | |
| Dod06g0286 | 619 | MobiDBLite | consensus disorder prediction | 1 | 230 | - | - | |
| Dod06g0286 | 619 | SUPERFAMILY | RNA-binding domain, RBD | 335 | 611 | IPR035979 | GO:0003676 | |
| Dod06g0286 | 619 | SMART | rrm1_1 | 232 | 304 | IPR000504 | GO:0003723 | |
| Dod06g0286 | 619 | SMART | rrm1_1 | 527 | 604 | IPR000504 | GO:0003723 | |
| Dod06g0286 | 619 | SMART | rrm1_1 | 336 | 408 | IPR000504 | GO:0003723 | |
| Dod06g0286 | 619 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 231 | 308 | IPR000504 | GO:0003723 | |
| Dod06g0286 | 619 | CDD | RRM3_RBM39_like | 525 | 606 | - | - | |
| Dod06g0286 | 619 | SUPERFAMILY | RNA-binding domain, RBD | 226 | 332 | IPR035979 | GO:0003676 | |
| Dod06g0286 | 619 | CDD | RRM1_RBM39_like | 232 | 304 | - | - | |
| Dod06g0286 | 619 | Gene3D | - | 522 | 619 | IPR012677 | - | |
| Dod06g0286 | 619 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 526 | 608 | IPR000504 | GO:0003723 | |
| Dod06g0286 | 619 | SMART | rrm2_1 | 336 | 408 | IPR003954 | GO:0003676 | |
| Dod06g0286 | 619 | SMART | rrm2_1 | 527 | 604 | IPR003954 | GO:0003676 | |
| Dod06g0286 | 619 | PANTHER | CC1-LIKE SPLICING FACTOR | 2 | 615 | - | - | |
| Dod06g0286 | 619 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 335 | 412 | IPR000504 | GO:0003723 | |
| Dod06g0286 | 619 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 2 | 615 | - | - | |
| Dod06g0286 | 619 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Dod06g0286 | 619 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 426 | 540 | IPR029123 | - | |
| Dod06g0286 | 619 | MobiDBLite | consensus disorder prediction | 35 | 79 | - | - | |
| Dod06g0286 | 619 | Gene3D | - | 162 | 317 | IPR012677 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod06g0286 | Dod-Chr6 | 3842953 | 3851103 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod06g0286 | 232 | 398 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.402 | 4.91e-13 | 70.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod06g0286 | K13091 | - | gmx:100789839 | 701.434 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dod06g0286 | 06 | 3842953 | 3851103 | Dod06g0286 | 06 | 3842953 | 3851103 | ECH |