Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0280 ATGAACATCATGCAAAACTTAGCTGAGAGACTAAGACCTCTTGTGGGTTTGAATGGTTGGGACTACTGTATCTGCTGGAAACTGACTGAAGACCAAAGGTTCCTTGAGTGGTTGGGATGCTGTTGTGGTGGCACTGAAAACAATCAAAATGGTGAGGAAGATCACCTTTTCCCAGTCTCTTCAGTTGGTTCATGCAGGGATGCCATGTTTCCACATACCATAACAAAGTCATGTGATCTTCTTTCCCAACTTTCTACTTCCATACCCATAGATTCCGGGAATATTCATGCAGAGACTCTATTAACAAACCAACCAAATTGGGTGAACTATTCCAATAGCTTGGATCCAAATATCTTGGAAGATACAATTGGGACCCAGGTTTTGATTCCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACCAAACAAGTATCTGAAGATCAGCAAATAATAGATTTTGTGACAGGCCAGTGCATTGTCTTGGTGGATCAGGAAGCAGCAAACAACTCAGTCAGCTTCAACATTGATGTGAACTCAATTACCAACGTGCAACCAAATCCACTTCTAGGCGATGAAAACGAAGGGGATGACAACAGGAACAATCAATTTCAGCTCACAACAGCATCAGAGACTTCACATGACATCCCCATCAGCCTATGCAGTTCTCCACTGAACTTCATACAGAATTTCAATTACAACCCGCAGAACAGAATGAAGAACGATGATGGCTTCTCTGAAGAGTACCAAGGTGGTTCCTTCCTTCATGACAAGCAAAACAACCCACTCAAGTCCACCCCAGAAGAGGATCAACATGATAACAACTATCAGAAATGCATGGTGAATGATACACAAGACTTGCATGCACAATACGTGGAACCTTTATTGGACACAAAGGAGAATCAAGGACATGATGACAAGGACTTGCTGAAACATGTTGCTGGAAGGTCAGATTCAATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAACCAATCCAAGAACCTTGTGGCTGAGAGGAAGAGAAGGAAGAAGCTCAATGACAGATTGTATAACCTTCGTTCTTTGGTTCCAAGGATCTCTAAGCTGGATAGAGCATCTATTCTTGGAGATGCCATTGAGTTTGTGAAGGACTTGAAGCAGCAAGTGAAGGAGCTTCAGGATGAGCTTGAGGAAAATTCAGACACAGGAGCTGACAGCAACTGCATCAATAATGGCAATAATAACAATCAATTTGCGGGTATGCAGCCAGATATTGTTAGACAGAATAATGGATCAGGTGAACTTGGGCCAAAAGGTGAAAATGTTAAGACCCAAAATGGGTTTCATCATGCGGGGGCATCAGGGAATGGCTATATGCCAAAGCAAAAACAGGAAGTGGATGCTGCTACCATTGACAAGCAGACACAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTAATAGATGGGAATGAGTACTTTGTGAAGGTGTTCTGTGAGCACAAGCCTGGTGGGTTTGTGAAATTGATGGAGGCATTGAACACCCTAGGCATGGATGTAGCACATGCCACGGTAACCAGCCACAAAGGCCTTGTGTCGAATGTTTTTAAAGTGGAGAAAAAGGACAGTGAAATGGTTGAGGCTGAAGATGTAAGAGACTCGCTTCTGGAGCTTACGCGGAATCCATCTAGAGGGTGGACTAATGAGATCACAGCAACGTCAGAGAATGGAGTAGGCAGCAGCAGGGATCAACATCACCTCCACAACCACCAGATGGCTGCTTATCATCCCCACCCCTTTCATTCCTAA 1821 0.4415 MNIMQNLAERLRPLVGLNGWDYCICWKLTEDQRFLEWLGCCCGGTENNQNGEEDHLFPVSSVGSCRDAMFPHTITKSCDLLSQLSTSIPIDSGNIHAETLLTNQPNWVNYSNSLDPNILEDTIGTQVLIPVPGGLVELFVTKQVSEDQQIIDFVTGQCIVLVDQEAANNSVSFNIDVNSITNVQPNPLLGDENEGDDNRNNQFQLTTASETSHDIPISLCSSPLNFIQNFNYNPQNRMKNDDGFSEEYQGGSFLHDKQNNPLKSTPEEDQHDNNYQKCMVNDTQDLHAQYVEPLLDTKENQGHDDKDLLKHVAGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLKQQVKELQDELEENSDTGADSNCINNGNNNNQFAGMQPDIVRQNNGSGELGPKGENVKTQNGFHHAGASGNGYMPKQKQEVDAATIDKQTQQMEPQVEVALIDGNEYFVKVFCEHKPGGFVKLMEALNTLGMDVAHATVTSHKGLVSNVFKVEKKDSEMVEAEDVRDSLLELTRNPSRGWTNEITATSENGVGSSRDQHHLHNHQMAAYHPHPFHS* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0280 606 CDD bHLH_AtAMS_like 344 408 - -
Dod06g0280 606 Pfam Helix-loop-helix DNA-binding domain 348 390 IPR011598 GO:0046983
Dod06g0280 606 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 341 390 IPR011598 GO:0046983
Dod06g0280 606 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 96 571 - -
Dod06g0280 606 SMART finulus 347 396 IPR011598 GO:0046983
Dod06g0280 606 CDD ACT_UUR-ACR-like 499 562 - -
Dod06g0280 606 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 96 571 - -
Dod06g0280 606 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 154 IPR025610 -
Dod06g0280 606 Gene3D - 330 406 IPR036638 GO:0046983
Dod06g0280 606 Coils Coil 380 407 - -
Dod06g0280 606 MobiDBLite consensus disorder prediction 436 465 - -
Dod06g0280 606 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 403 IPR036638 GO:0046983
Dod06g0280 606 MobiDBLite consensus disorder prediction 237 273 - -
Dod06g0280 606 MobiDBLite consensus disorder prediction 313 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0280 Dod-Chr6 3790237 3792974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0280 4 577 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.774 7.28e-156 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g0280 bHLH-MYC_N 3.2e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0280 - - aprc:113871920 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0280 06 3790237 3792974 Dod06g0280 06 3790237 3792974 ECH