Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0275 ATGTCTTCTCAAGGCAGGGCTCTTCCTGACCCCGTTCACTTTTTCCAGATTGTTGGGAAAAACAGCCTTCGAAATGGAGAGCTGAGGATTCCAAGATGTTTTGTAAGAAGACATTGGCAAGGAATATCAAACCCATTACTCCTTGTGCTTCCCAACGGTGCTAAATGGGAAATGAAGTGGGAAAAACGTGATGTTGACGTTTGGTTAGTCAGTGGTTGGAGAAAATTTGCAGAGTTTTGTTCTTTGTATAAGGATCAGTTTTTGTTGTTCAAATATGAAGGGAAGTCACAGTTTGGGGTTATAATACTTCATCCTTTTGCCTTGGAAATAGAGTACCCTTCCCCAAATGGAACTTTTGAAGGTGAAGACAGTGATGATAACTCTATCGAAATCCTTGACGGCATTTCATCATCACGTCATGGTAAAAGGCCAAAATCTCCATTACCACATTCTCATTCTCCTAAGAAGAAGAAAATCAACACAAAAGAAGATCCTGAATCCTATCCCAGCAACCAAAAATTCCATGCAGGTTCTGATGATGCAATAAGGCCAAAAGCTAAAGGTGGAAGAAGGAACTTCTCAAAATCAGAGGAGGAAAGCAGCAGTGCTGTGCAGAGAGCCAAGGCTTTCAGCTCTGACAATCCTTGGTTCATTCGTATAATGCGACCCACGCACATTCAAAGATATTATCTGCCCATACCAGGCAAAACTATAACAACACAAGAGCAAGAGGAGAATGATAGTGTAACTCTTTGGGTTTCTGAGGAGAGAACTTGGAAGGTCAAGTTCTGCCGGAATATTTGCAATGGACAAATATCTCTTACTACTGGTTGGAAGGGCTTTGTAGAAGACAATAAGTTGAGACTCGGTGATGTTTGTGTCTTTGAGAAATATGAATGCAGAGGAGCTTCGTTTAGAATTGTTCTTTTCCGTGCCACACAAGAGTCAACCCCTCCTCCATCTCAAGAGATAACAGGCAAAGTGTCAAAGGACCACTTCACCCTCACTTTAAAGCCTTCTCATTTGAAGAGTGCTACGCACATACCGATAGGCTTCATCAGAAACTATGCTCATAATGCAAAACATGTGACACTGCATGTTGGAGAGAGATCATGGCAGGTGAAGCTAGACTATTATCCTCGGTATTCCTACGGAAGATTATCTGCGGGTTGGCCTACATTTGTGAGGGATTGTAACTTGAAGAAAGGAGATGATTGTTTCTTTCAACTCATCGATAAGGAGAACCTTGCCCTTCAAGTTAAAGTTTCAAGACGCATCCACTGA 1284 0.419 MSSQGRALPDPVHFFQIVGKNSLRNGELRIPRCFVRRHWQGISNPLLLVLPNGAKWEMKWEKRDVDVWLVSGWRKFAEFCSLYKDQFLLFKYEGKSQFGVIILHPFALEIEYPSPNGTFEGEDSDDNSIEILDGISSSRHGKRPKSPLPHSHSPKKKKINTKEDPESYPSNQKFHAGSDDAIRPKAKGGRRNFSKSEEESSSAVQRAKAFSSDNPWFIRIMRPTHIQRYYLPIPGKTITTQEQEENDSVTLWVSEERTWKVKFCRNICNGQISLTTGWKGFVEDNKLRLGDVCVFEKYECRGASFRIVLFRATQESTPPPSQEITGKVSKDHFTLTLKPSHLKSATHIPIGFIRNYAHNAKHVTLHVGERSWQVKLDYYPRYSYGRLSAGWPTFVRDCNLKKGDDCFFQLIDKENLALQVKVSRRIH* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0275 427 ProSiteProfiles B3 DNA-binding domain profile. 216 313 IPR003340 GO:0003677
Dod06g0275 427 Pfam B3 DNA binding domain 335 425 IPR003340 GO:0003677
Dod06g0275 427 Pfam B3 DNA binding domain 20 99 IPR003340 GO:0003677
Dod06g0275 427 Pfam B3 DNA binding domain 221 311 IPR003340 GO:0003677
Dod06g0275 427 PANTHER B3 DOMAIN-CONTAINING 10 312 - -
Dod06g0275 427 SUPERFAMILY DNA-binding pseudobarrel domain 210 311 IPR015300 -
Dod06g0275 427 CDD B3_DNA 332 424 IPR003340 GO:0003677
Dod06g0275 427 CDD B3_DNA 217 311 IPR003340 GO:0003677
Dod06g0275 427 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Dod06g0275 427 ProSiteProfiles B3 DNA-binding domain profile. 370 426 IPR003340 GO:0003677
Dod06g0275 427 Gene3D - 321 426 IPR015300 -
Dod06g0275 427 Gene3D - 195 315 IPR015300 -
Dod06g0275 427 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 330 423 - -
Dod06g0275 427 SMART B3_2 333 426 IPR003340 GO:0003677
Dod06g0275 427 SMART B3_2 217 313 IPR003340 GO:0003677
Dod06g0275 427 SMART B3_2 14 109 IPR003340 GO:0003677
Dod06g0275 427 MobiDBLite consensus disorder prediction 135 206 - -
Dod06g0275 427 Gene3D - 9 106 IPR015300 -
Dod06g0275 427 MobiDBLite consensus disorder prediction 178 197 - -
Dod06g0275 427 PANTHER B3 DOMAIN-CONTAINING 330 423 - -
Dod06g0275 427 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 312 - -
Dod06g0275 427 SUPERFAMILY DNA-binding pseudobarrel domain 332 422 IPR015300 -
Dod06g0275 427 SUPERFAMILY DNA-binding pseudobarrel domain 10 104 IPR015300 -
Dod06g0275 427 CDD B3_DNA 13 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0275 Dod-Chr6 3763828 3766177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0275 333 424 B3 DNA Binding Superfamily AT3G18990 28.421 6.25e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod06g0275 B3 9.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0275 - - ahf:112712192 409.068