Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0229 ATGATGTTTCAGGAGACCGCCCCATCGGCGATGATGGCGGCCGCCGCCGTGACTCGGTGGCCGACTCAGTGGACTCGGGAGCAGGACAAGCTGTTCGAGGCGGCTCTGCTGTACTTCCCTGAGGGGTTGCCGGACCGCTGGGACAGGATCGCCGACCGAGTTCCCGGCAAGTCGGCGTCCGAGGTCAGGGAACGCTACCAGCAACTCGTTCGCGATGTCCACGAAATCGACTCGGGCCGAGTCGAGGTTCCGAGTTACGCTGATGACCCGGAGAGTTCTGGTGGCGGAGGGTCGCCTTCTTGGGACTCTGCTAATCAGATCTCGTTCGGGTCAAAACCTAAGCAAAGTGAGAACGAGAGGAAGAAAGGCACGCCATGGACCGAAGAGGAACACAGGCTATTTCTGATTGGGCTCAGCAAGTTTGGCAAGGGGGATTGGAGAAGCATTTCAAGAAATGTAGTTGTGACAAGAACCCCAACACAAGTAGCTAGCCACGCCCAAAAGTACTTCCTTCGCCAGAGTTTGACTTCGGTGAGGAAAGAGAGGAAAAGGTCAAGCATACATGACATAACCACGGTGGACAGTAACTCGGTACCTGTGCCCATGGATCAGAATTGGGTTCCTCCTCCAGCTGGGCAAATGCAATTGCAGCAGTCACAAGAAATGCAATTGCAGCAGCAGCCACAAGAGATGGAAATGCAGCAGTTTAGTCCACCAAACAATTTGCATAATCAAGTGGGTGGGTTTGGGTATCCAAACTATGTTGGCTATTGA 774 0.5401 MMFQETAPSAMMAAAAVTRWPTQWTREQDKLFEAALLYFPEGLPDRWDRIADRVPGKSASEVRERYQQLVRDVHEIDSGRVEVPSYADDPESSGGGGSPSWDSANQISFGSKPKQSENERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQSLTSVRKERKRSSIHDITTVDSNSVPVPMDQNWVPPPAGQMQLQQSQEMQLQQQPQEMEMQQFSPPNNLHNQVGGFGYPNYVGY* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0229 257 SUPERFAMILY Homeodomain-like 120 173 IPR009057 -
Dod06g0229 257 SMART sant 20 72 IPR001005 -
Dod06g0229 257 SMART sant 122 172 IPR001005 -
Dod06g0229 257 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 121 173 IPR006447 GO:0003677
Dod06g0229 257 ProSiteProfiles Myb-like domain profile. 24 70 IPR001005 -
Dod06g0229 257 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 21 232 - -
Dod06g0229 257 CDD SANT 24 70 IPR001005 -
Dod06g0229 257 ProSiteProfiles SANT domain profile. 121 174 IPR017884 -
Dod06g0229 257 MobiDBLite consensus disorder prediction 80 126 - -
Dod06g0229 257 ProSiteProfiles Myb-like domain profile. 118 170 IPR001005 -
Dod06g0229 257 MobiDBLite consensus disorder prediction 96 113 - -
Dod06g0229 257 Pfam Myb-like DNA-binding domain 23 69 IPR001005 -
Dod06g0229 257 Pfam Myb-like DNA-binding domain 125 170 IPR001005 -
Dod06g0229 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 174 IPR017930 -
Dod06g0229 257 SUPERFAMILY Homeodomain-like 22 77 IPR009057 -
Dod06g0229 257 CDD SANT 125 170 IPR001005 -
Dod06g0229 257 Gene3D - 19 83 - -
Dod06g0229 257 Gene3D - 124 175 - -
Dod06g0229 257 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 232 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0229 Dod-Chr6 3293592 3295981 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod06g0229 Myb_DNA-binding 4.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0229 - - adu:107467340 335.88