Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0221 ATGCTTCTTCGTATCAGCTGCATTCTTTTAATGTGCCTCCTCCTGAGCTCCTTCTCTCCCCCAATCAAAGCTCATTCCTTCCATAACTTCACCTTGCCCCACCAACACCCTCAACCTGAAGCTGTCGTCCATGAAGTTCAACGGACAATCAATGCTTCAGTTTCTAGAAGGGAGCTGCTCCTCACAAAGGAGAACCAAGCCCCGTGCCTCACCGGGAACCCCATCGACGACTGCTGGCGCTGCGACCCAAACTGGGCTGCGAACCGGCAGCGCCTCGCCGACTGCGCCATAGGCTTCGGCCGCGACGCCATGGGGGGAAAAGGCGGCCAGATCTACGTCGTAACCGACTCCTCCGACACCGACCCGGCGAACCCCGTCCCCGGAACCCTCCGCCACGCAGTGATCCAAGACGTGCCTCTGTGGATCGTGTTCTCCGCCGACATGACCATAACCCTAAAACACGAGCTCATCTTCAACAGCTTCAAGACCGTCGACGGCAGAGGCGCCAACGTGCAGGTCACCGGCCACGGCTGCATCACGCTCCAGTATGTCTCCAACGTCATCATCCACAACATCCACGTGCACCACTGCAAGCCCTCGGGGAACACTAACATAAGATCGAGCCCAACGCACGTTGGGTGGAGGGGGAGATCGGACGGTGATGGGATATCGATCTTTAGCGCCAGGAAGATCTGGATCGACCATTGCTCGCTGTCTTACTGCACTGATGGGTTGATCGATGCTATTATGGGGTCCACTGGGATTACTATATCGAACAACCATTTCGCGCACCATGATGAGGTGATGCTGTTGGGGCACGATGATAGGTACTTGCCAGATAAAGGGATGCAGGTGACAATAGCGTTTAATCACTTCGGGGAAGGGTTGGTGCAGAGGATGCCGAGGTGCAGGTTAGGGTATATTCATGTTGTCAACAATGATTTCACGCAGTGGGAGATGTATGCTATCGGTGGCAGTGCTAACCCTACCATCAACAGCCAGGGCAACCGTTACACCGCTCCCTCCAATCCTGATGCCAAAGAGGTGACGAAGCGCGTGGACACGGATGAGGGGCGATGGAGTGATTGGAACTGGAGGACTGACGGGGACATAATGGTAAATGGAGCTTTCTTTGTACCATCGGGGGCAGGGCTCAGCGCTCAGTATGCAGAGGCATCCAGCTTGCAACCCAAATCCGCCGTGCAAATCGACCAGCTCACCATGTACTCCGGTGTCTTCGGTGATCCCAGGGATAATGGGGACTTATATCCCGGTTTCAACGGGGGTGGGACCGTGACCAGCTCCACCAACAAGGGAGGCAGCAATGCGGGGTCCAGTGGCGACGATGGCGACTTCTTCGGAATGATATTCAGAGGCGGTAGCAGCAGCCAAGCAGCACCACCCTCACCTTCCTCAACTACTGTAGCAATTGTTTCTACATTTTTGTCTCTTCTAATTATTTTCATTTTGGACACTACCACCAACCGTGCTATTCTGTTATCATTACTATGA 1512 0.545 MLLRISCILLMCLLLSSFSPPIKAHSFHNFTLPHQHPQPEAVVHEVQRTINASVSRRELLLTKENQAPCLTGNPIDDCWRCDPNWAANRQRLADCAIGFGRDAMGGKGGQIYVVTDSSDTDPANPVPGTLRHAVIQDVPLWIVFSADMTITLKHELIFNSFKTVDGRGANVQVTGHGCITLQYVSNVIIHNIHVHHCKPSGNTNIRSSPTHVGWRGRSDGDGISIFSARKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHDDRYLPDKGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSNPDAKEVTKRVDTDEGRWSDWNWRTDGDIMVNGAFFVPSGAGLSAQYAEASSLQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTSSTNKGGSNAGSSGDDGDFFGMIFRGGSSSQAAPPSPSSTTVAIVSTFLSLLIIFILDTTTNRAILLSLL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0221 503 MobiDBLite consensus disorder prediction 428 444 - -
Dod06g0221 503 MobiDBLite consensus disorder prediction 423 447 - -
Dod06g0221 503 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Dod06g0221 503 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Dod06g0221 503 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Dod06g0221 503 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Dod06g0221 503 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Dod06g0221 503 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Dod06g0221 503 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Dod06g0221 503 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Dod06g0221 503 PANTHER PECTATE LYASE 7 434 - -
Dod06g0221 503 SMART amb_all 147 344 IPR002022 -
Dod06g0221 503 Pfam Pectate lyase 155 336 IPR002022 -
Dod06g0221 503 PANTHER PECTATE LYASE 18-RELATED 7 434 IPR045032 GO:0030570
Dod06g0221 503 SUPERFAMILY Pectin lyase-like 73 404 IPR011050 -
Dod06g0221 503 Gene3D - 72 414 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0221 Dod-Chr6 3217980 3223969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0221 1 451 Polysaccharide Lyase AT3G53190 64.459 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0221 K01728 - gmx:100808438 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0221 06 3217980 3223969 Dod06g0221 06 3217980 3223969 ECH