Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0213 ATGGCTGGGAAAGAGGAGAATCGAATATTCGTTGGAGGGTTATCTTGGGACGTTACGGAGCGTCAACTCGAGCATGCCTTTGGCCGTTACGGCAAAATTCTCGAATGCCAGATCATGATGGAAAGAGATACAGGCCGTCCACGTGGATTTGGGTTTATTACATTTGCAGACCATAGATCAATGGAGGATGCAATCAAGGAAATGCATGGACGAGAAATTGGTGATCGCATCATCTCAGTCAATAAGGCCCAGCCCAAGATGGGGGGTGATGATGTAGACCATGGTTACAGGGGTGGCTACTCATCAGGTGGTAGGGGAAGCTATGGGGTTGGAGATAGGGTTGGACAGGATGACTGCTTCAAATGTGGACGTCCAGGGCACTGGGCCCGAGATTGCCCTTTGGCAGGGGGTGGGGGTGGTCGTGGTCGGGGTGGTGGTTCATTTTCTTCACGCCCTAGGTTTGGAGGTGCTGGTGGACATGGGGATCGTCTTAGTGGTGAACGTGATCGTTACCTTGATGATCGTTATGATGGAGGACGATATGGCGATAGGGATCGTTTTGATACCCGAGATTACAAATATGGCACTCGCGATCGCTATGCTAGTGACAGGTATCCAACTAGTGGAGATCGATACAGTGGTGGCTCAGATAATTACCCACAAAACGGCTATGGCAAAGAAAGAGGCTATGACCGGTACAGTGGTCCACGAGGAGGCGGTGATCGGTATGGAAGTGGAATGCCAGCTCGAGATGAAGGAAGGAATTATCGGGGTAGGCCTGGTCCATATGACCGCCCAAGCCGCGGTGCCCGTCCGTCCTCATTCGACCGCTACTGA 837 0.5197 MAGKEENRIFVGGLSWDVTERQLEHAFGRYGKILECQIMMERDTGRPRGFGFITFADHRSMEDAIKEMHGREIGDRIISVNKAQPKMGGDDVDHGYRGGYSSGGRGSYGVGDRVGQDDCFKCGRPGHWARDCPLAGGGGGRGRGGGSFSSRPRFGGAGGHGDRLSGERDRYLDDRYDGGRYGDRDRFDTRDYKYGTRDRYASDRYPTSGDRYSGGSDNYPQNGYGKERGYDRYSGPRGGGDRYGSGMPARDEGRNYRGRPGPYDRPSRGARPSSFDRY* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0213 278 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 228 - -
Dod06g0213 278 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Dod06g0213 278 SMART rrm1_1 8 81 IPR000504 GO:0003723
Dod06g0213 278 MobiDBLite consensus disorder prediction 136 278 - -
Dod06g0213 278 SUPERFAMILY RNA-binding domain, RBD 4 109 IPR035979 GO:0003676
Dod06g0213 278 SUPERFAMILY Retrovirus zinc finger-like domains 105 138 IPR036875 GO:0003676|GO:0008270
Dod06g0213 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Dod06g0213 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Dod06g0213 278 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Dod06g0213 278 MobiDBLite consensus disorder prediction 162 205 - -
Dod06g0213 278 Gene3D - 1 114 IPR012677 -
Dod06g0213 278 Gene3D - 115 143 - -
Dod06g0213 278 PANTHER TRANSFORMER-2-RELATED 1 228 - -
Dod06g0213 278 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0213 Dod-Chr6 3080387 3093470 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0213 9 88 C2H2 Transcription Factor Family AT2G19380 41.250 9.29e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0213 - - gmx:100809519 425.246