Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0130 ATGAACAGGGGTAACAAGCAAAAATCTTGCATCGAGAAAAAGAAAATGCATAACAAGGATGCTTGCTCTCCCTCCTCCAATGGCGGATTTGGCGCCAACGCCGGCGGCGGAGGTCAATTGCAGTCAAACAGCGGCGCCTTAGCTTCCTTCTACTCCGCTCTGTTGAACGACAATCCGTCGCTCTCGGCGAACAGCAGCAATGGCGGCGTCTCGCTTTATCCGTACTCTGACTCGGCTGGGACTCAGATCAACTCGTACGACTCGTGCGTCATACAGAAGCACCAGGACATGGTGAACCGCCACAGCATGTGCCTCACTCGCCTCGTTGAAACTTCCAAAGAGGTCGAAGCTCTTCGCCAAGAGATCGCGCAACTCCGCGCATTGAACAAGGAGCTGCAGAAGCAGCTCAACTTCGTCATCCAGGCTTCGCTGGAGAACCAGTTCGGCGGCGGAACTTCCGCCCAGACTCAAACGACGCCGTTCGACGTGGTGCATGGGTTCCGCGGCTTCCACATTGGGGAAGGGAAAGAGAACTGCGGCGATTGGAATAACAACAGCAATAGCAATAACAGCAACAGTAAGGAGCAGGAAGTTGTTTCGGACGAGAGTCCAACGAGCGTGATTGAGAATAACGGCGTTGAAGTGGAGAGGTTCTCGCTGCCGAAGAGCATTTCTGTGAGGTCCAATGGTTACTTGAAGATGGCTCAGTCTGCGGCCGCCGCTGCAACCAACAACAACAACAACACTGCGTGTCGCACCAAAGGGGCTACTCGCCCACGCGCCTCCTCCACTCCACCTGATGCCGTGCAAAAGGTATATGTGCGTGGAGGGAAGACAGAGGAAGAGCCTCTTGAAATGGTGGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACATGCCCATATGGAGACCACTGCCAATTTGCTCACGGTATTGGAGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCTTATGGGCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCCATATCACAGCCTAAGCCCAGATCAATGAAGCTGGAAAGATAA 1134 0.5353 MNRGNKQKSCIEKKKMHNKDACSPSSNGGFGANAGGGGQLQSNSGALASFYSALLNDNPSLSANSSNGGVSLYPYSDSAGTQINSYDSCVIQKHQDMVNRHSMCLTRLVETSKEVEALRQEIAQLRALNKELQKQLNFVIQASLENQFGGGTSAQTQTTPFDVVHGFRGFHIGEGKENCGDWNNNSNSNNSNSKEQEVVSDESPTSVIENNGVEVERFSLPKSISVRSNGYLKMAQSAAAAATNNNNNTACRTKGATRPRASSTPPDAVQKVYVRGGKTEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAISQPKPRSMKLER* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0130 377 Coils Coil 108 142 - -
Dod06g0130 377 MobiDBLite consensus disorder prediction 1 20 - -
Dod06g0130 377 MobiDBLite consensus disorder prediction 178 210 - -
Dod06g0130 377 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 62 370 - -
Dod06g0130 377 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Dod06g0130 377 SMART c3hfinal6 331 358 IPR000571 GO:0046872
Dod06g0130 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 319 IPR000571 GO:0046872
Dod06g0130 377 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Dod06g0130 377 PANTHER CCCH ZINC FINGER/TIS11-RELATED 62 370 IPR045877 GO:0003729
Dod06g0130 377 SUPERFAMILY CCCH zinc finger 327 361 IPR036855 GO:0046872
Dod06g0130 377 MobiDBLite consensus disorder prediction 179 210 - -
Dod06g0130 377 ProSiteProfiles Zinc finger C3H1-type profile. 331 359 IPR000571 GO:0046872
Dod06g0130 377 MobiDBLite consensus disorder prediction 1 26 - -
Dod06g0130 377 SUPERFAMILY CCCH zinc finger 290 325 IPR036855 GO:0046872
Dod06g0130 377 Gene3D - 327 363 - -
Dod06g0130 377 Gene3D - 288 326 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0130 90 375 C3H Transcription Factor Family AT1G68200 51.027 7.62e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod06g0130 zf-CCCH 3.1e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0130 K18753 - gmx:100819250 500.745