Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0114 ATGTCGTCTACAGGGAGAGCAAGGTTGAATTCAATAATCTTCAAGAGTGCTATCTCTCCTCCAAGACCAAGGACTCGCAGAAGGCGATCCAGGAATCAAGATTCTGGTGGTGCTGCGAATCCTGGGAATACTCTGTTTGTGACAGGCTTGACCAGGAGAATCACTATGCCTGAACTATACAATTACTTCAGCAGTGTGGGAAAGGTTAAGAGGTGCCACGTGTTAAGAGATCACCGTACTAGAAGGTCTCTTGGATACGGTTTTGTCACCCTGGAGACTATTGAGGAAGCTGAACGATGTATCAAGTATTTGGATAGATCCTTCTTTGATGATCAACTCAGATCTGTGGAAAAGGCAAAGAGAAGCCGTGGCTTTAATCCTTCGAGAAATAAGCGGGGAAATTACATTAGGAACTGTATATCTTTCCTCGACTTTGTTATACAATCTCACAATAACTTGATAATCTATTATCTTCGAACACTTGGAACTTTTAAGCTGCTGTTTCTCATTAGTTATTTTCGTATATGTGAATGA 534 0.4139 MSSTGRARLNSIIFKSAISPPRPRTRRRRSRNQDSGGAANPGNTLFVTGLTRRITMPELYNYFSSVGKVKRCHVLRDHRTRRSLGYGFVTLETIEEAERCIKYLDRSFFDDQLRSVEKAKRSRGFNPSRNKRGNYIRNCISFLDFVIQSHNNLIIYYLRTLGTFKLLFLISYFRICE* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0114 177 MobiDBLite consensus disorder prediction 18 44 - -
Dod06g0114 177 Gene3D - 17 139 IPR012677 -
Dod06g0114 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Dod06g0114 177 SMART rrm1_1 44 117 IPR000504 GO:0003723
Dod06g0114 177 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 21 128 - -
Dod06g0114 177 PANTHER OS08G0385900 PROTEIN 21 128 - -
Dod06g0114 177 SUPERFAMILY RNA-binding domain, RBD 36 136 IPR035979 GO:0003676
Dod06g0114 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0114 Dod-Chr6 1488137 1489327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0114 15 127 Eukaryotic Initiation Factors Gene Family AT5G06000 30.088 8.47e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0114 K12897 - nnu:104596011 132.494