Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0079 ATGGCAATCCAGCATCACAATGGCCAACTAGAACACAATGAAAACGTTTCTTCTGTCCTTGATGCCCTTTACTGTGACGAAGGAAAGTGGGAAGATGAAGAAGAAGAAGGAGAAGGAGAGAGTGAACTGACAACAAACAATGATGATGGGCTGGTGGTGGAGCAGTTGGACACTGCTTCTCTTCTCCCTCTCCTCTTGTTGGAGCAAGACTTGTTCTGGGAAGATGAAGAGCTGAACTCCCTCTTCTCCAAAGAGAAGGTTCAACAAGAAGCCTATTATAACAACAACAACAACAACAACAATAATGATAATTTGGCTTTGAACTCTTCTCTATGTGTGGCTCGCCGTGAGGCAGTTGAATGGATGCTTAAGGTGAATGCTCATTATGGGTTCTCAGCTCTTACTGCAACACTGGCCGTCACTTACCTGGATAGGTTCCTCTTGAGCTTCCATTTTCAAAGGGAGAAGCCATGGGCGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACCCAAGTGCCTCTTCTCTTGGACCTTCAAGTGCAAGACACCAAATATGTGTTTGAGGCTAAGACTATTCAGAGAATGGAGCTTCTTGTTCTCTCCACCCTCAAGTGGAAGATGCACCCTGTGACCCCACTCTCGTTCCTAGATCACATTATAAGGAGGCTAGGACTCAAAACTCATCTTCACTGGCAGTTTCTGAGGCGTTGTGAGCACCTTCTTCTGTCTCTGCTTTTAGATGCAAGATTTGTTGGTTGTCTTCCTTCTGTATTGGCCACTGCGACAATGCTGCATGTTATAGACCAGATTGAGCACAGTGATGGAGTGGAATACAAAAACCAGCTTCTGGGTGTTCTCAAAATTAACAAGGAGAAAGTAGATGAATGTTATAATGCCATTCTCCAGCTCTCAAATGCCAATAATAACTATGATGCTCATAACAACAACAATAGGAAGCGCAAGTATGACCAAATCCCTGGTAGCCCAAGTGGCGTAATTGATGCTGCTTTCTTCAGCTCTGATGGCTCCAACGATTCGTGGTTAGTGGGGTCATCATTATTTTCATCACCAGAGCCTCTGTTCAAGAAGAGCAGAATCCAAGGACAACAAAAAATGAAATTGTCACCACTCAACCGGGTCATTGTCGGAATTGTTGGCACCTCCCCGTAA 1191 0.4475 MAIQHHNGQLEHNENVSSVLDALYCDEGKWEDEEEEGEGESELTTNNDDGLVVEQLDTASLLPLLLLEQDLFWEDEELNSLFSKEKVQQEAYYNNNNNNNNNDNLALNSSLCVARREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWAIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWQFLRRCEHLLLSLLLDARFVGCLPSVLATATMLHVIDQIEHSDGVEYKNQLLGVLKINKEKVDECYNAILQLSNANNNYDAHNNNNRKRKYDQIPGSPSGVIDAAFFSSDGSNDSWLVGSSLFSSPEPLFKKSRIQGQQKMKLSPLNRVIVGIVGTSP* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0079 396 SUPERFAMILY Cyclin-like 74 215 IPR036915 -
Dod06g0079 396 Pfam Cyclin, N-terminal domain 111 214 IPR006671 -
Dod06g0079 396 ProSitePatterns Cyclins signature. 115 146 IPR006671 -
Dod06g0079 396 Gene3D - 114 215 - -
Dod06g0079 396 PANTHER CYCLINS 44 372 IPR039361 -
Dod06g0079 396 SUPERFAMILY Cyclin-like 218 330 IPR036915 -
Dod06g0079 396 PANTHER CYCLIN D3.1 PROTEIN 44 372 - -
Dod06g0079 396 Pfam Cyclin, C-terminal domain 217 332 IPR004367 -
Dod06g0079 396 SMART Cyclin_C_2 217 348 IPR004367 -
Dod06g0079 396 CDD CYCLIN 115 207 IPR013763 -
Dod06g0079 396 Gene3D - 216 307 - -
Dod06g0079 396 SMART cyclin_7 120 208 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0079 Dod-Chr6 1055209 1057671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0079 1 348 Core Cell Cycle Gene Families AT4G34160 52.707 5.31e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0079 K14505 - gmx:547740 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0079 06 1055209 1057671 Dod06g0079 06 1055209 1057671 ECH
Dod08g2041 08 47772830 47775145 Dod06g0079 06 1055209 1057671 ECH
Dod08g2037 08 47710840 47713134 Dod06g0079 06 1055209 1057671 ECH
Dod02g0746 02 9690510 9692355 Dod06g0079 06 1055209 1057671 PCT