Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0026 ATGATCCGATTCCAAGGTAGCATCATGATGACGTCAAACTCTAGGACAAATGGCAACTGCGAAACTTCAGATTCCAATGAGATCAACTTTGCATCTGATGCAGCAAAACGTGTGAGGTATGAAGAGAACACAGGGTTTCAGAAGTTCAAAGGCGTTGTGCCTCAGCAAAATGGGCATTGGGGTGCTCAGATATATGCAAACCACCAAAGAATCTGGCTTGGGACATTCAAATCGGAGAGAGAAGCTGCCATGGCTTACGACAGCGCCACCATCAAGCTTAGGAGCGGAGAAAGCCACAGGAACTTCCCATGGAATGATCAAACAGTTCAAGAGCCTCAGTTTCAAAGCCATTACAGCACAGAAGCAGTGCTTAGCATGATCAGAGATGGCTCCTATCCACCCAAATTTGCTACATTTCTTAGGACTCAAACCCAAGATGATCAAGAACAAATTGTAGTAGGAGTTAGCGACAACAAGCATATAAGGGTGAAGGGTGGGGAACATTTCTCTTGCACCCAGCTTTTTCAAAAGGAATTGACACCAAGTGATGTGGGCAAGCTCAACAGGCTTGTCATCCCCAAAAAGCATGCAGTCACCTATTTCCCTTGTGTTTGTGGCAATGCAGATGCAAATAATAATGAAATGGATGGTGTTGACATCGAGGTTGTCTTCTATGACAACCTCATGAGATCATGGAAATTTCGATACTGTTATTGGAAGAGCAGCCAGAGTTACGTGTTCACAAGAGGGTGGAACCGGTTTGTGAAGGATAAGAAATTAAAGGCTAAAGACATCATTGCCTTTTATTTGTGTGAGCCTATGAATTGGAGAGAAGGGGGACAAGTGTTTTCTTTGATTGATGTGATCTATACTGCAGATGAGATGAGGCATTGCCTTGGAGAGAAGAAGGTTGACACTAAACAAATTATGGGGAACAAGTTAACTTTGAGTAGTGAGGTGGAAGATGACTATAATGATGATCATGAATATGAAGGCCAAGAGACCAAGGAAAGAGAGGATTTGAATGCACTGCATTCTTCGGCACATAATTCACAGAAGGGTTTGAGGCTCTTTGGTGTATGTATCAACTGA 1092 0.4313 MIRFQGSIMMTSNSRTNGNCETSDSNEINFASDAAKRVRYEENTGFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPQFQSHYSTEAVLSMIRDGSYPPKFATFLRTQTQDDQEQIVVGVSDNKHIRVKGGEHFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPCVCGNADANNNEMDGVDIEVVFYDNLMRSWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDIIAFYLCEPMNWREGGQVFSLIDVIYTADEMRHCLGEKKVDTKQIMGNKLTLSSEVEDDYNDDHEYEGQETKEREDLNALHSSAHNSQKGLRLFGVCIN* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0026 363 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 10 363 IPR044800 GO:0003700
Dod06g0026 363 ProSiteProfiles AP2/ERF domain profile. 48 103 IPR001471 GO:0003700|GO:0006355
Dod06g0026 363 SMART rav1_2 48 109 IPR001471 GO:0003700|GO:0006355
Dod06g0026 363 Gene3D - 170 285 IPR015300 -
Dod06g0026 363 Pfam B3 DNA binding domain 175 272 IPR003340 GO:0003677
Dod06g0026 363 ProSiteProfiles B3 DNA-binding domain profile. 175 289 IPR003340 GO:0003677
Dod06g0026 363 SMART B3_2 175 289 IPR003340 GO:0003677
Dod06g0026 363 MobiDBLite consensus disorder prediction 1 24 - -
Dod06g0026 363 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 10 363 - -
Dod06g0026 363 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Dod06g0026 363 CDD B3_DNA 174 270 IPR003340 GO:0003677
Dod06g0026 363 SUPERFAMILY DNA-binding pseudobarrel domain 173 277 IPR015300 -
Dod06g0026 363 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Dod06g0026 363 Gene3D AP2/ERF domain 47 104 IPR036955 GO:0003700|GO:0006355
Dod06g0026 363 Pfam AP2 domain 48 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0026 Dod-Chr6 481718 482809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0026 48 288 RAV Transcription Factor Family AT1G51120 62.598 7.79e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod06g0026 B3 1.2e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0026 K09287 - gmx:102660503 398.667