Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0024 ATGGATCGCAAGAGGGGAAGGCACGAGCCTCCTTTCAACGGCAATGGCGCCTCCAAGAGATCCAGGCCAGAATTGGAGTCTTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCCGGCTGTCCATTTGGTGAGGGATGCCATTTCCTGCATTATGTTCCCGGTGGCTTCAAAGCTGTCTCTCAGATGATAAACGTGGGTAGCAATCCCACTACTCCACTAGTTGGTAGAGCACCACCTGTTCCACCATCCTTCCCAGATGGGTCTTCTCCTCCAGTAGTTAAAACCCGATTGTGCAACAAGTATAATTCTGCTGAAGGTTGCAAATTTGGTGACAAATGCCACTTTGCCCATGGTGAGTGGGAACTTGGCAAGCCTACTGTCCCTTCGTATGAAGATAGACCAAGAGTTGGTGGGCGAGTTGAGCCCCAATCTCATGGAGCTGCTGCCAGCTTTGGAGCCTCAGCTACTGCAAAGATTAGTATCAATGCTTCCCTAGCTGGAGCTATTATTGGAAAAAATGGTGTCAACTCCAAGCAAATCTGTCGTGTAACAGGAGCAAAACTTTCTATCAGGGAGCATGATTCTGATCCTAACCTTAAAAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAGGCAAGTTCCATGGTTCATGAACTTATCCTGAATGTTAGTTCTGTCTCTGGACCTCCAATGAAGAATACTCATACACGTACCTCTGCCCCTGCAAACAACTTCAAAACTAAGCTCTGTGAAAATTTTGCGAAAGGCTCCTGCACTTTTGGGGAAAGGTGTCACTTTGCACATGGATCAGAAGAACTACGCAAGGCTGGAATGTGA 867 0.4671 MDRKRGRHEPPFNGNGASKRSRPELESFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQMINVGSNPTTPLVGRAPPVPPSFPDGSSPPVVKTRLCNKYNSAEGCKFGDKCHFAHGEWELGKPTVPSYEDRPRVGGRVEPQSHGAAASFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQIKQASSMVHELILNVSSVSGPPMKNTHTRTSAPANNFKTKLCENFAKGSCTFGERCHFAHGSEELRKAGM* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0024 288 CDD KH-I 166 227 - -
Dod06g0024 288 ProSiteProfiles Zinc finger C3H1-type profile. 254 281 IPR000571 GO:0046872
Dod06g0024 288 Gene3D K Homology domain, type 1 158 250 IPR036612 GO:0003723
Dod06g0024 288 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 8 287 - -
Dod06g0024 288 Pfam KH domain 165 227 IPR004088 GO:0003723
Dod06g0024 288 SMART kh_6 161 231 IPR004087 GO:0003676
Dod06g0024 288 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 287 - -
Dod06g0024 288 ProSiteProfiles Zinc finger C3H1-type profile. 101 128 IPR000571 GO:0046872
Dod06g0024 288 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Dod06g0024 288 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 154 234 IPR036612 GO:0003723
Dod06g0024 288 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 279 IPR000571 GO:0046872
Dod06g0024 288 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Dod06g0024 288 SUPERFAMILY CCCH zinc finger 98 131 IPR036855 GO:0046872
Dod06g0024 288 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Dod06g0024 288 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Dod06g0024 288 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Dod06g0024 288 SMART c3hfinal6 254 280 IPR000571 GO:0046872
Dod06g0024 288 Gene3D - 251 286 - -
Dod06g0024 288 Gene3D - 95 132 - -
Dod06g0024 288 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Dod06g0024 288 ProSiteProfiles Type-1 KH domain profile. 162 226 - -
Dod06g0024 288 MobiDBLite consensus disorder prediction 1 34 - -
Dod06g0024 288 SUPERFAMILY CCCH zinc finger 254 284 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0024 Dod-Chr6 463015 468525 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod06g0024 KH_1 2.2e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0024 - - gmx:100792652 513.457