Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0016 ATGTACCCGTGTTCAACCACGTCCTCATCGTCGTGTCAGTCGCAGAACTCGACAATATCAGAAAGCGGGTTGACCCGATACGGCTCGGCACCGGGGTCTCTGCTGAGGACGGCAGTGGATGCCGTGATAGCAGGGGCCCCCCTCGGTGTCGGTGGCCACTACTTCACAGCCACGGGGGAGTCCTCGGAGTCGCCGTGCAAAGTCAACAACTCATCATCGTCGACAGATCCCAAAGAGCAGCACCACAAGGGAGGGGGAGGGGGAGGGGGAGGGCTCCAGAGATCGTACGGGTTCCAGGAGGCCTTGGGCAGAGGAGGATCTTCTTCGTTGATCCGCCAGAGGAGCTCCCCCGCCGTCTTCCTCAATCATCTCGCCACCTCTGCCCATCTTCATGACAATAACAACAACAACAACAACAATAACTCTGGGTTCACGATCACGAGGGTAAGCGGAAGCAGCTACGGCTCTACTGTTGTGAGTAACAGCGGGCACGGGCATGGAGTGGCAAGGTTGAAGTCTCAGTTGAGCTTCACGGGGCAAGAGTCTCTTACTCAGATATCAGAGGTGAGCGAGAGCGAGAGCGAGAGTGCTGCTGCTGACCATAGACTCCCTTATGGGCATGGGCATGGGCCCTCCTCCTCCTCGTCTACCTTTGCAATGGACCCGTGGGACAGCTCCAACTCCAACTCCATCGTGTTCTCCGCCAACAAACGCCCCAAAAACATTGATGGAGACATTCTCAACTGTCTCACTGCCTTGGACTCTCAGTTCGGTCTGCCACAAACAAGTCTGGAAATGGCAACGATGGACAAGCTAATGCATATTCCTGAGGATTCCGTCCCTTGTAAAATCCGTGCCAAGCGGGGCTGTGCCACTCATCCTCGCAGCATTGCTGAACGGGAGAGAAGAACTAGAATTAGTGGGAAGCTCAAAAAATTACAGGAACTTGTGCCCAATATGGATAAGCAAACAAGCTATGCAGACATGCTTGATTTGGCCGTTCAACATATTAAAGGTCTTCAAGGTCAAGTCCAGGTGTGTAAAAGTACCTTAGCATTGGCTGTTGCTTTGGAACTTATAAACTGCTTTAAATAG 1095 0.5315 MYPCSTTSSSSCQSQNSTISESGLTRYGSAPGSLLRTAVDAVIAGAPLGVGGHYFTATGESSESPCKVNNSSSSTDPKEQHHKGGGGGGGGLQRSYGFQEALGRGGSSSLIRQRSSPAVFLNHLATSAHLHDNNNNNNNNNSGFTITRVSGSSYGSTVVSNSGHGHGVARLKSQLSFTGQESLTQISEVSESESESAAADHRLPYGHGHGPSSSSSTFAMDPWDSSNSNSIVFSANKRPKNIDGDILNCLTALDSQFGLPQTSLEMATMDKLMHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQGQVQVCKSTLALAVALELINCFK* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0016 364 MobiDBLite consensus disorder prediction 182 221 - -
Dod06g0016 364 Gene3D - 287 350 IPR036638 GO:0046983
Dod06g0016 364 PANTHER TRANSCRIPTION FACTOR BHLH129 23 349 - -
Dod06g0016 364 MobiDBLite consensus disorder prediction 59 96 - -
Dod06g0016 364 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 23 349 - -
Dod06g0016 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 349 IPR036638 GO:0046983
Dod06g0016 364 SMART finulus 296 346 IPR011598 GO:0046983
Dod06g0016 364 MobiDBLite consensus disorder prediction 59 75 - -
Dod06g0016 364 MobiDBLite consensus disorder prediction 1 22 - -
Dod06g0016 364 Pfam Helix-loop-helix DNA-binding domain 295 341 IPR011598 GO:0046983
Dod06g0016 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 340 IPR011598 GO:0046983
Dod06g0016 364 CDD bHLH_AtbHLH_like 295 346 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0016 Dod-Chr6 350639 354864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0016 23 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 45.580 4.06e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod06g0016 HLH 5.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0016 - - zju:107422215 326.25