Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0009 ATGGGATCATGCGTGTCGGTGACGGTGGAGAGGAGGCCTTGTGTTCCCGTCTCTGAAGAAGACGCCAATGGGAAGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGGAGGAGGGCCACTTCTTGGTCCTCGTTATCGTTTGATTACAGCAGGATGGAGGACCAAGTGTGGCTGCAAAGAGTTCCCGGCAGAATGTTCCTCAATGGATCCACCCACTCTGCTTCCTTGTTCTCTAAGCAAGGCCGAAAAGGCCTCAACCAGGACGCCGTGCTTCTTTGGGAGAACTTCTGTTCAAAGGAGGACACCGTGTTTTGTGGTGTGTTCGATGGGCACGGACCTCATGGCCACAGGGTTGCAAAGAAAGTCAGGGATTCTTTCCCTCTAAAGCTTATGGCCGAATGGGATTTGCATCCAAACAACAACTGTTCCCTGCTGCAGGAGGTTGATGATGAGACTGCTGCCGCTGATCATCATCATGAGCCCGATGCCGCAAATAATAATCTTGCCGCAGTCAGAGAATCTTTCGTGAAGGCTTGCAAGGTTATGGACAAAGAACTCAAGCTGCAGCACGATATTGACTCTTACTGCAGTGGCACTACAGCAGTTACCTTGGTCAAGCAGGGGCAGCACCTTGTGATTGGAAATGTTGGGGACTCGAGAGCTGTATTGTGTACCCGAGATCCCGACCACTCTCTCATTGCTGTTCAGTTGACCACTGACTTTAAGCCAAATCTTCCAAGGGAAGCAGAGAGGATCAGGCTATGTAAAGGAAGGGTGTTTGCCCTTCCGAATGAGCCAGAGGTTGCTCGAGTTTGGCTGCCAAACGTTGATTCTCCAGGGCTTGCTATGGCGCGGGCTTTTGGGGATTTTTGCCTCAAGGACTTTGGAGTGATCTCACTTCCTGATGTCTCATACCATCGCATTGCTGACGAGGATGAATTTGTTGTATTGGCCACAGATGGGTGGGCATTGTGGCATCCGCGCCACGGTCATTGTGCAGCTCGAATAGTGGTTGAGACAGCAGTTCAAGCGTGGAGGACGAAGCTCCCCGCTTCTAAGATTGATGACTGCTCTGTCGTTTGCCTCTTCTTTGATTCTGATTCTGCAGATTCAGGCTTCATTATGTCTACCATGGAGGAGGCACCAATTGACCAATCTGACGACGTTGCCAGTTGTTTATCTGCCGCTAACACTCTAGTTGACCACTGTCCTCCTCCTCACCAGTCAAACTCAACACTACCTACTTAG 1245 0.5084 MGSCVSVTVERRPCVPVSEEDANGKRRRRRRRRRRRRATSWSSLSFDYSRMEDQVWLQRVPGRMFLNGSTHSASLFSKQGRKGLNQDAVLLWENFCSKEDTVFCGVFDGHGPHGHRVAKKVRDSFPLKLMAEWDLHPNNNCSLLQEVDDETAAADHHHEPDAANNNLAAVRESFVKACKVMDKELKLQHDIDSYCSGTTAVTLVKQGQHLVIGNVGDSRAVLCTRDPDHSLIAVQLTTDFKPNLPREAERIRLCKGRVFALPNEPEVARVWLPNVDSPGLAMARAFGDFCLKDFGVISLPDVSYHRIADEDEFVVLATDGWALWHPRHGHCAARIVVETAVQAWRTKLPASKIDDCSVVCLFFDSDSADSGFIMSTMEEAPIDQSDDVASCLSAANTLVDHCPPPHQSNSTLPT* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0009 414 ProSiteProfiles PPM-type phosphatase domain profile. 72 363 IPR001932 -
Dod06g0009 414 CDD PP2Cc 72 363 IPR001932 -
Dod06g0009 414 SMART PP2C_4 61 361 IPR001932 -
Dod06g0009 414 PANTHER ALPHABET, ISOFORM E-RELATED 1 384 - -
Dod06g0009 414 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 384 - -
Dod06g0009 414 Pfam Protein phosphatase 2C 78 320 IPR001932 -
Dod06g0009 414 Gene3D - 66 365 IPR036457 -
Dod06g0009 414 SUPERFAMILY PP2C-like 65 364 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0009 Dod-Chr6 233632 235732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0009 1 370 PP2C-type Phosphatase Gene Family AT3G02750 47.085 9.88e-128 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0009 - - gmx:100802479 436.032