Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2988 ATGGAGTCTTCGGGGTTGGGGAACAAAAGTGAATCCCCACATCTCAGTGAAGAAGATACTGCCGCTGACAAGAAATGCAGTAGTAAATTCTACGATGTCTATGGACCCCAAGCCAAGGCAGATGTTGTTTTCAACTCACCAGAAGATAATTCAACATTGAATCTAAATGACATTCAAGGACTTGTAACTTGGGTGCTTGGGGAAGGATTTATGCCATCATGGGTTTTTATCAAGAATAAGCCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGTCTGGATGCAGCTTTGTTCCTATCACAGTCTAAAGTGCTTCCCAGTTTAAAGAAGTTCTGTGGTAAACCAAGGCCGGTCCTAGCCCTCAGCTGTGTATCAGATGGTATGCAAACAATAGATGCTCTCCTAACATGCAAGCTGAAAAGAAAGAGGGATCAAAATAGTTCGATAATGAGGAAATCTACTCTGATACCTCAACAAGAAGGAGGCTGTCATGGTGCAGACAGTATATTGTTTATGGATCTTGTAAAAGACATACCTTTCCCTGTTATGTACTATACACTAACACAGAAAGAACTGGAAGAGAATGGATATTCTGTTAATCAGCCAGGTTTTCTTTCTACATTGCCTGCTCCTTTGGGATCTTCTTTTCATGAGATGTTAGCACTTGATTGTGAGATGTGCATCACGAGCGAGGGTTTCGAGTTGACAAGAGTTACTCTAGTGGATATCAAAGGACAGGTTTTGATGGATGAATTGGTTAAGCCATCAAATACTATCGTTGATTACAACACAAGATTTAGTGGAATAACATCTGAGATGTTAGATGGGGTGACGACAAGTCTGAGAGACATTCAGGAAGAATTTCTGAAGCTGGTTTACAAGGAGACTATCCTTGTTGGGCATTCTATGGAAAATGATTTGTTAGCATTAAAGATATCTCATGACTTGGTCATTGACACAGCAGTATTGTACAAGAACCCCCGGGGATCATATTATAAAAGTGCTTTGCGGTTTCTTGCTAAGAAATTCCTTTCGAGGGAGATACAGCAATCAAGTGAATGGACATGA 1071 0.4062 MESSGLGNKSESPHLSEEDTAADKKCSSKFYDVYGPQAKADVVFNSPEDNSTLNLNDIQGLVTWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSQSKVLPSLKKFCGKPRPVLALSCVSDGMQTIDALLTCKLKRKRDQNSSIMRKSTLIPQQEGGCHGADSILFMDLVKDIPFPVMYYTLTQKELEENGYSVNQPGFLSTLPAPLGSSFHEMLALDCEMCITSEGFELTRVTLVDIKGQVLMDELVKPSNTIVDYNTRFSGITSEMLDGVTTSLRDIQEEFLKLVYKETILVGHSMENDLLALKISHDLVIDTAVLYKNPRGSYYKSALRFLAKKFLSREIQQSSEWT* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2988 356 Pfam Exonuclease 222 308 IPR013520 -
Dod05g2988 356 Gene3D - 216 354 IPR036397 GO:0003676
Dod05g2988 356 SMART exoiiiendus 219 355 IPR013520 -
Dod05g2988 356 CDD REX1_like 221 354 IPR034922 -
Dod05g2988 356 PANTHER LD29573P 18 353 - -
Dod05g2988 356 MobiDBLite consensus disorder prediction 1 21 - -
Dod05g2988 356 SUPERFAMILY Ribonuclease H-like 218 352 IPR012337 -
Dod05g2988 356 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2988 Dod-Chr5 55947580 55972747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2988 210 350 C2H2 Transcription Factor Family AT2G48100 27.711 2.03e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2988 K14570 - gmx:100802793 565.844