Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2963 ATGCGGGCATCTGACCACCGAAGCAAGCTGCACCTGAAGAAGAAGGACCTCTCCCAAATCCGCAAGGCTGCCCGCGTCCTGAGGGATCCTGGCACTACTTCTTCCTGGAAGTCCCCCCTTAGCTCCTCCTCAAGATCTGTCGCTCTCCCTCTCCCTCCTCCTTCTTCAGCACCCGCATGCAGGAATGGGAACCCCACAACCACAAGGTTCACTGCCATTTCTCAACTTGATTCTCACTTGTCTTCTCTCCCCGCCGGCACCAGTAACAACACCAATACCAATGGGAAAGACAAGAGGGTGTTCTTGTACAATTGGAAGAACCACAAGTCTTCGAGCGAAAAGAGAGGAGGAGCGGCCAAATACAACGACGTCTCAGAGGAGGAGGAAGAAGAAGAAGATGATGATGGCGGTGGTGGTGGTGGTGGTGTTGGGAATGAGGTATCTTCGTCGCTTCTGGGGAGTTTGGAGGACAGCTTGAGCGACGCTCGCAATGGGTGCGATTCAAAGAGTGATACATACTTGGGGGGCGGTGCCACTCGCTCTCGCTCTTGTTCCATCTTCCGATGCGGTGGAGACGCCAACCTCGTCTCCTTGGCCACCCCTGCTGCCAGAAGAAGAGCACCGCCCCCTAACAAAAAGAGTAAGAAATCCAACGCCCTCTCCCTCTCCCATTCCCATTTGGATCTTCTGGCTAATAGTTATAGAGATGCCACTCTTAATCTAGGCAGAAAATATTTCAAGCCCAATGCATTGCTTGACTCTGTTGACCACTCTGTTGATGATGATGATGATGATTTTGATGATACTGAAGACTACTCTAATTCTGAGGATGTGAGGAGGGTTTCGGGCACATCCCCTTTGCTCCTCAAACTCAAGCAAAAGAATTGGTCTCGATCTTCCTCCAAGTTGCTGCGAAGAAGCCTAAGAAAGGAGGACTCTTCTTACTCTTACAGTACCCCTGCATTGTCAACCAGTTCCTACAACTGGTATGGTCACCGTTATCCTAGCACTGTTGGATCTTGGGATGGCACCACAACCTCTGTCAACGATGCTGATGACGAGATAGACGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATTCCTTGCTGGTCAAAAAGGACACCCAAGCATAGACGCATGTGTGGGGGTTGCTATTCTCCTTCCCTATCAGATACCTTGAGGAGGAAAGGAAGTAGCATACTCTGCGGGGGTCAAACTATTAATCCCAGACACCAGAGATCCTCTTCGGCCTCCCACAAGCGCAGAATCTCTTTGAGGAATGCGCAGGGTGTTATTCCATTGCTCACTAACAGTGGTGATGCTAGAGGAGGCTCGTCTATAGGAACTGGCAGGAGCGATGACGAGCTATCTACCAACTTTGGGGAGCTTGATCTCGAGGGCTTGAGTCGATTGGATGGAAGGCGATGGTCATCGAGCTGTAGGAGTCAAGAAGGATTGGAGATTGTAGCCCTCAATGGAGGGGAAGGGGAGGAGGATGGCACGCTGGAGAATAGTAGGAGTTTCAGCCACAAGTATAAGCCCATGTTCTTCAATGAACTGATTGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCTGTTTCAAGGGGGCGGATTGCTCCTGTTTATCTTTTTCAAGGTCCCCGTGGGACTGGTAAAACATCGACAGCCAGGATATTTGCTGCTGCCTTGAATTGTGTGGCTCCTGATGAGAGCAAGCCTTGTGGCTACTGCCGGGAATGTACTGATTTCATTTCTGGCAAGCACAGTGATCTACTGGAAGTTGATGGAACCAATAAGAAGGGAATCGATAGAGCTAGATATCTACTGAAAAGATTGTCAATCGGGTCATCATCAGCCTCCCCACGATATACATTTTTTGTTATTGATGAGTGTCACTTGTTACCCTCCAAGGCATGGCTGGGATTACTCAAGTTTCTGGAAGACCCGCCTCAGCGAGTTGTGTTCATATTTATTACATCTGATCTTGATAACGTGCCACGAACAATACAATCTCGATGCCAGAAGTACCTGTTTAACAAAATTAAAGACGGGGATATAGTAGATAGATTGGGGAAAATATCTGCTCAAGAGAACCTTGATGTCGAAACAGATGCATTGGACCTCATTGCTACAAATGCAGATGGTTCACTTCGAGATGCTGAAACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATCACTACTTCTCTTGTCAATGAACTTGTAGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCAATGTCATCAGACACTGCAGAGACGGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTCATTATGGACATCATTGCTGGATCATATACTATCATCGATGCCAAACCTGATGATTCATTCTTTGGTGGACGAAGTTTGAATGAATCAGAGTTGGAGAGGTTGAAGCATGCTTTGAAGCTTCTCTCAGAAGCTGAGAAACAGTTGAGGACTTCCAGTGAACGCTCGACATGGTTCACAGCAACTCTGTTACAGCTTGGTACTATGCCTTCTCCAGATCTTACTCAGTCTGGCAGCAGCAGGAGGCAGAGCTGCAAAACAACTGAAGATGATCCATCAAGTGCTTCAAGAGACGGTACTGCTTCCAAGCATAAGTCTGACCTTCAATATATGCCTCGGAAGTCAACATCCCCTGCATCCCAGCGAAAAGCAGTAAATGGCAATTCTGGCCATCAAAAGGATAGACCCTCAAATATTGATGGTTTAAGCCTGAAATCGAGGCCATCAAATAGCCCGGTCTTAGATGATGGCTCCACCATTGTCTCGTCTGATGATCTTATGGTTGGGAATACAATGTTTAGATGCATAGATTCTGGAAAGTTACACTGTATCTGGGCGCATTGTATTGGGAGATGTCACTCCAAGACATTGAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCCATACGTGAAGTTGAAGGTGTTCTGGTAGCATATGTTGCATTTGGGGATGGAGATATTAAACTTAGGGCTGAGAGGTTTTTGAGAAGTATCACAAACTCCATGGAAATGGTTCTTAGGTGCAATGTAGATGTCAGAATTATCCACTTGCTGGATGGTGAAGGTGAAAATCAGGCTAATCTACCAGTTCTAAGGCAGGCAGAGTCAACAGTGGCAAGTGAGAACGAACAAAGAGGAGGTCGTATAAATGGAACAGAGTCTTATCCTTGTTTTCCTTCTTTGCTGGATGGAAACCTTCAATCTGCCACCAATTCATCCGATATTCTGGCCATAAGGAATGGTGTGAGGGAGAGAAGACAAGATAATCCAATGCAGAGAATTGAGTCCATCATTCGTGAGCAGAGGCTGGAAACTGCCTGGTTACAGGCTGTAGAAAAAGGTTCCCCTGGATCATTGAGTCGATTGAGACCTGAGAAGAATCAGGTCCTGCCACAGGATGGTATCTATTGTATAGACCCAATGGAGTCCATGGATTCTACAAGATTTTCCTCTCACCAGCATTGGGAAGATGACCTGAATAGTGAAGTCAAAGGTTTAAGCATTAAAAATGGAAGGGTCTTACAGAAGGATCAGATTGTTAGAAGGGCAGATCGTTATCCCGATGTCCCCAAGTTTATTGCATGA 3684 0.4658 MRASDHRSKLHLKKKDLSQIRKAARVLRDPGTTSSWKSPLSSSSRSVALPLPPPSSAPACRNGNPTTTRFTAISQLDSHLSSLPAGTSNNTNTNGKDKRVFLYNWKNHKSSSEKRGGAAKYNDVSEEEEEEEDDDGGGGGGGVGNEVSSSLLGSLEDSLSDARNGCDSKSDTYLGGGATRSRSCSIFRCGGDANLVSLATPAARRRAPPPNKKSKKSNALSLSHSHLDLLANSYRDATLNLGRKYFKPNALLDSVDHSVDDDDDDFDDTEDYSNSEDVRRVSGTSPLLLKLKQKNWSRSSSKLLRRSLRKEDSSYSYSTPALSTSSYNWYGHRYPSTVGSWDGTTTSVNDADDEIDDHLDLPGRQGCGIPCWSKRTPKHRRMCGGCYSPSLSDTLRRKGSSILCGGQTINPRHQRSSSASHKRRISLRNAQGVIPLLTNSGDARGGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGGEGEEDGTLENSRSFSHKYKPMFFNELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVAPDESKPCGYCRECTDFISGKHSDLLEVDGTNKKGIDRARYLLKRLSIGSSSASPRYTFFVIDECHLLPSKAWLGLLKFLEDPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVDRLGKISAQENLDVETDALDLIATNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTIIDAKPDDSFFGGRSLNESELERLKHALKLLSEAEKQLRTSSERSTWFTATLLQLGTMPSPDLTQSGSSRRQSCKTTEDDPSSASRDGTASKHKSDLQYMPRKSTSPASQRKAVNGNSGHQKDRPSNIDGLSLKSRPSNSPVLDDGSTIVSSDDLMVGNTMFRCIDSGKLHCIWAHCIGRCHSKTLRQLLHNHGKLVSIREVEGVLVAYVAFGDGDIKLRAERFLRSITNSMEMVLRCNVDVRIIHLLDGEGENQANLPVLRQAESTVASENEQRGGRINGTESYPCFPSLLDGNLQSATNSSDILAIRNGVRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGIYCIDPMESMDSTRFSSHQHWEDDLNSEVKGLSIKNGRVLQKDQIVRRADRYPDVPKFIA* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2963 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 731 IPR027417 -
Dod05g2963 1227 Pfam DNA polymerase III subunits gamma and tau domain III 738 857 IPR022754 GO:0003887
Dod05g2963 1227 Pfam DNA polymerase III, delta subunit 524 684 - -
Dod05g2963 1227 CDD AAA 523 681 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 436 457 - -
Dod05g2963 1227 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 235 1223 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 861 950 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 31 50 - -
Dod05g2963 1227 Gene3D - 748 862 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 257 279 - -
Dod05g2963 1227 CDD HLD_clamp_pol_III_gamma_tau 684 747 IPR045085 -
Dod05g2963 1227 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 509 858 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Dod05g2963 1227 Gene3D - 501 682 IPR027417 -
Dod05g2963 1227 Gene3D - 686 747 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 861 875 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 903 928 - -
Dod05g2963 1227 Coils Coil 820 847 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 876 902 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 200 220 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 1 69 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 1 16 - -
Dod05g2963 1227 SUPERFAMILY post-AAA+ oligomerization domain-like 755 857 IPR008921 GO:0003677|GO:0006260
Dod05g2963 1227 MobiDBLite consensus disorder prediction 934 950 - -
Dod05g2963 1227 PANTHER PROTEIN STICHEL-LIKE 1 235 1223 - -
Dod05g2963 1227 SMART AAA_5 541 691 IPR003593 -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 257 272 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 403 423 - -
Dod05g2963 1227 MobiDBLite consensus disorder prediction 110 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2963 Dod-Chr5 55535603 55542558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2963 503 799 Core DNA Replication Machinery Family AT1G21690 25.163 9.83e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2963 - - adu:107471079 1742.24