Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2952 ATGGAGATTCAGCAAAGCATGAAGCTCATGGTCCACCGAAACTCCCACAAGAAGAAACGTGTTTACAACAACAACAACAAAGCCACCGTGACCACCACCACAATTGCAACTCCAAGGCTCAAATGGAGGAGCATCTTCTTCCTCCAAAGATCACCACCAACAACCAAAACCCGAACAACACCACCACCACAAGAGTTCATCTGCCCCATCTCCAGTTCCCTCATGGCGGACCTCGTAATAGTCTCCTTCGGCCACTCCTTCGAACGAGCCTCCGTCCTCTCCTGCAAAGATCCCAACTTCACCCCTCTCCTCTTCGACGGCACCACCCCTGATTTCTCCACCGTGATCCCCAACCTCACCCTCAAATCCCCCATCTCTAAATGGTGTCATGCCTCCTCTACTGTCCCTCCCCAGGCCCCCCCCCACCAGTCCCAAACCAACAACCTCGTACACACCCTCATAATGTCCTCCTCACACCAACAACAGCAACAAGAAACCACAGAAAAAGAACAAGAAGAAGAGGAACTGATCCAAGAAAGAATGGTCATGGTCCCCCCTTCTACTTCCTCCTCCTCATCGGTGGAATCCATTGCCACTGCCACGTCAGCATGGAGCTCAACCCCACCTCCTTGA 633 0.5245 MEIQQSMKLMVHRNSHKKKRVYNNNNKATVTTTTIATPRLKWRSIFFLQRSPPTTKTRTTPPPQEFICPISSSLMADLVIVSFGHSFERASVLSCKDPNFTPLLFDGTTPDFSTVIPNLTLKSPISKWCHASSTVPPQAPPHQSQTNNLVHTLIMSSSHQQQQQETTEKEQEEEELIQERMVMVPPSTSSSSSVESIATATSAWSSTPPP* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2952 210 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Dod05g2952 210 MobiDBLite consensus disorder prediction 183 204 - -
Dod05g2952 210 Pfam U-box domain 63 131 IPR003613 GO:0004842|GO:0016567
Dod05g2952 210 MobiDBLite consensus disorder prediction 156 210 - -
Dod05g2952 210 PANTHER U BOX DOMAIN-CONTAINING 40 164 - -
Dod05g2952 210 SUPERFAMILY RING/U-box 51 134 - -
Dod05g2952 210 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 40 164 - -
Dod05g2952 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 145 IPR013083 -
Dod05g2952 210 Coils Coil 159 179 - -
Dod05g2952 210 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2952 Dod-Chr5 55430968 55431600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2952 60 170 U-box Gene Family AT5G40140 48.649 3.16e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2952 - - gmx:100798675 156.762