Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2947 ATGTATTCACCAAAGAATGCTCCTGCTTCAACTCTAGTCGGAAGCAACTCATTAGGTCATGGTCGGCATATAGATTGTGGTGCCACTATTGAACCTGTCAATGGAGGAAACAGTCTCGCCAGCAACCCTAATCTCACCTCAAAGCAGCGTCTGCGATGGACACACGAGTTACATGGACGCTTTGTTGATGCCGTGGCACAACTTGGTGGGCCGGATCGTGCTACACCTAAAGGTGTTCTCAGAGTTATGGGTGTAGAAGGCTTAACAATATATCATGTCAAAAGCCATTTACAGAAATATAGACTAGCAAAATACCTACCTGACTCCTCATCTGACGGGAAAGAAGCTGACAAGAAAGAAATAGGGGATATACTTTCCAATCTAGATAGTTCATCCGGGATGCAAATTACAGAAGCACTAAAGCTTCAGATGGAGGTGCAGAAGCGATTACATGAGCAATTGGAGGTGCAGAGACAGCTGCAGTTACGGATAGAAGCACAGGGTAAATACCTGAAGAAGATTATTGAAGAGCAACAGCTGCTTAGTGGGGTTCTTTCAGAAGCACCTGACTCAGGGACTGCAGCTCCAGTTCCAGGAGATATGCACCAAGAACCTGATAATAAGACTGACCCAACAACCCCTGTCCCAACCTCTGAGTGCGCCCTTCTGGAGAAATCTGCCAAAGGGCATGCTCCAGTTAAGAGTCTTTCAATTGACGAGTGTCTTTCGTCTCAACATGAACCCTTGACACCTGACTCTGGTTGCCGTGTTGGTTCCCCTATTGACAGTCGTAAAGGGGAGAGATCAACAAAGAGGCAGCGAGTGACCATTGAGGGAGCAAATTCTAAACCGGAAATGGTGCTTCCACATCAGATACTGGAACCAAGAATGTCATCATACCAGCAACCAAACGCTGCTTGCTCCACCCTCACCCAAGAGCAGTTTGATCCGTCATTGGGTATAGCTGCCAGTGCTAGAAGTGATAAGGAATTGAAGTAG 999 0.4675 MYSPKNAPASTLVGSNSLGHGRHIDCGATIEPVNGGNSLASNPNLTSKQRLRWTHELHGRFVDAVAQLGGPDRATPKGVLRVMGVEGLTIYHVKSHLQKYRLAKYLPDSSSDGKEADKKEIGDILSNLDSSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQLLSGVLSEAPDSGTAAPVPGDMHQEPDNKTDPTTPVPTSECALLEKSAKGHAPVKSLSIDECLSSQHEPLTPDSGCRVGSPIDSRKGERSTKRQRVTIEGANSKPEMVLPHQILEPRMSSYQQPNAACSTLTQEQFDPSLGIAASARSDKELK* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2947 332 MobiDBLite consensus disorder prediction 244 332 - -
Dod05g2947 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 4 325 - -
Dod05g2947 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 4 325 IPR044848 GO:0003700
Dod05g2947 332 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
Dod05g2947 332 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Dod05g2947 332 MobiDBLite consensus disorder prediction 186 216 - -
Dod05g2947 332 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Dod05g2947 332 MobiDBLite consensus disorder prediction 295 318 - -
Dod05g2947 332 Pfam Myb-like DNA-binding domain 51 101 IPR001005 -
Dod05g2947 332 Gene3D - 47 106 - -
Dod05g2947 332 Coils Coil 137 157 - -
Dod05g2947 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 105 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2947 Dod-Chr5 55405256 55410243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2947 83 304 G2-like Transcription Factor Family AT2G01060 66.816 2.33e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod05g2947 Myb_DNA-binding 5.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2947 - - gmx:100786925 470.314