Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2939 ATGAAACGAATCGATGACGTCACTGCCACCGCCACGGCCACCGCAGCCAAGCCCGTCTTCCTAACAAAAGCCCAGCGCGAGCAATTAGCCCTCCAGCGCCGCCACGAAGAAGTCGCAGACCAGAAGCGCCGACAGGAGCAGCTCCTTTCCCGTAACCGCCCCTCCGATTCCACCGCCGATCCCAAACCCTCCTCCGACCCCGACCGCCGCGACCGCGACCGCGACCGCGACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGACAGAGACAGAGACAGAGACAGGGACCGAGACAGGGACAGGGATAGGGACAGAGACCGTGAACGGGAACGCGAGCGTGATAGGGCACGCGATCGGGATCGCGAAGCGGAACGGCGGAACCGAGAGAGGGAGCGCGAAGAGGAAGTTAAGGCCCGTGAGCGCGCGCGACAGGAGAAACTGGCGGAGCGGGATAGGGAGAAGGAGCTTGAATCGATCAAGGAGCAGTACCTTGGTTCGAAGAAGCCGAAGAAGCGCGTGATTAAGCCAAGCGAGAAGTTCCGTTTCTCTTTCGACTGGGAGAACACGGAGGACACCTCTCGCGACATGAACGCCCTCTACCAGAACCCTCACGAGGCCCAACTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGAGATGCGCGAGCAGATCCGCAAGAAGGACGGCCTAGAGGAGAAGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCCGCCGCCGACCTCTACGACACATTCGACATGCGCGTGGACCGCCACTGGAGCGAGAAGAAGCTGGAGGAGATGACGGAGAGGGACTGGCGCATCTTCAGGGAGGACTACAACATCTCCTACAAGGGCTCCAAGATCCCCCGCCCCATGCGCAGCTGGCAAGAGAGCAAGCTCAGTCAGGAGCTCCTGAAGGCTGTCGAGAAGGCCGGCTACAAGACTCCTTCCCCCATCCAGATGGCCGCCATCCCCCTTGGCCTCCAGCAGCGTGACGTCATCGGCATTGCAGAGACCGGTTCCGGTAAGACCGCCGCTTTTGTTCTTCCCATGCTCAGTTACATCACCAGACTTCCTCCCATTAGCGAGGAGAACGAGGCTGAGGGCCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCCCAGCAGATTGAGGATGAGACTGTCAAGTTTGCTCAGTATCTGGGAATCAAGGTGGTCTCCATTGTTGGTGGCCAGTCCATCGAGGAGCAAGGGTTTAAGATTAGGCAAGGCTGTGAGATTGTCATTGCCACTCCTGGTCGCTTGATCGATTGCTTGGAGCGCCGCTACGCCGTGCTCAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGATCGCATGATTGATATGGGTTTTGAGCCCCAGGTGATGGGTGTCTTGGATGCCATGCCTTCCAGCAATCTGAAGCCTGAGAATGAAGATGAGGAGCTCGATGAGAAGAAGATTTATAGGACCACTTATATGTTTAGCGCCACCATGCCTCCCGCGGTGGAGAGGCTTGCTAGGAAGTATCTGAGGAACCCTGTTGTGGTTAATATTGGCACTGCTGGAAAGGCGACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAGTCCGAGAAATTCCATAAGCTTCAGAGATTGCTTGATGAACTTAATGACAAGACCGCGATTGTGTTTGTTAACACTAAGAAGAATGCGGATATGGTTGCCAAGAACTTGGACAGGGAAGGGTACCGTGTGACTACTTTGCATGGTGGGAAGTCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGGTTTAGGACCAAGAGATACAATGTTCTTGTTGCAACAGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGATATGCCTGGGAATATTGAGATGTACACGCACCGTATCGGACGTACTGGTCGTGCAGGAAAGACCGGTGTGGCCACAACATTCCTCACTCTTCAGGACAGTGATGTCTTCTATGACCTCAAACAGATGCTTATTCAAAGTAACAGCCCGGTTCCACCTGAATTGGCGAGGCACGAAGCTTCCAAGTTCAAGCCTGGAACTATTCCTGACAGACCGCCTAGACGGAATGACACTGTGTTTGCACATTAG 2193 0.56 MKRIDDVTATATATAAKPVFLTKAQREQLALQRRHEEVADQKRRQEQLLSRNRPSDSTADPKPSSDPDRRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDRERERERDRARDRDREAERRNREREREEEVKARERARQEKLAERDREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGLEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWQESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVNIGTAGKATDLISQHVIMMKESEKFHKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDREGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2939 730 Coils Coil 21 41 - -
Dod05g2939 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 689 IPR027417 -
Dod05g2939 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 563 707 IPR001650 -
Dod05g2939 730 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 92 723 - -
Dod05g2939 730 SMART helicmild6 587 668 IPR001650 -
Dod05g2939 730 PANTHER - 92 723 - -
Dod05g2939 730 MobiDBLite consensus disorder prediction 698 730 - -
Dod05g2939 730 Gene3D - 271 540 IPR027417 -
Dod05g2939 730 Gene3D - 541 728 IPR027417 -
Dod05g2939 730 Coils Coil 554 574 - -
Dod05g2939 730 CDD DEADc_DDX23 321 536 - -
Dod05g2939 730 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 465 473 IPR000629 -
Dod05g2939 730 Coils Coil 222 248 - -
Dod05g2939 730 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 310 338 IPR014014 GO:0003724
Dod05g2939 730 MobiDBLite consensus disorder prediction 29 159 - -
Dod05g2939 730 Pfam DEAD/DEAH box helicase 335 525 IPR011545 GO:0003676|GO:0005524
Dod05g2939 730 Coils Coil 114 151 - -
Dod05g2939 730 CDD SF2_C_DEAD 548 677 - -
Dod05g2939 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 341 536 IPR014001 -
Dod05g2939 730 SMART ultradead3 329 551 IPR014001 -
Dod05g2939 730 MobiDBLite consensus disorder prediction 227 258 - -
Dod05g2939 730 Pfam Helicase conserved C-terminal domain 560 668 IPR001650 -
Dod05g2939 730 MobiDBLite consensus disorder prediction 62 159 - -
Dod05g2939 730 MobiDBLite consensus disorder prediction 705 730 - -
Dod05g2939 730 MobiDBLite consensus disorder prediction 29 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2939 Dod-Chr5 55304988 55310261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2939 308 690 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 1.58e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2939 K12858 - gmx:100799264 1148.65