LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g2938	ATGGACTCCAAAACTAGTACCAGAGCTCCCCCAAAACACCATCAGAAGGTGGCTGGAATCCAAACTATAGAAACAAAAGAAACCAAACCTTCTCCGCTGCAGATTCTGAAGACTGGCAAATCTGAACTGGCTGCTCCTGAAGAATTAGCAAGGCCTGTGCAAAACACATCAAAGCAGAATATTGGGGAAACTTCTGAAAACAAGACGCTGGGAATTTCAAACCAGAAGGGGTCTGCTGATTCCTTGAGTAATAAGTGTGCTTCTGGACCTTCCAGTTCTTCCTTGCCTGTTCTTGATCAAGCATCTGGCGTTGAACATGCTAACAGAGGCCCTCAAGAAAGCTCTATTGACCAAGAAAAAAAGACATCAGAATATGGAAGTGTGAAGAACAATTCATTCTCTGCCAAATTTAGTGATAGGGCTAGCAGCCTTGCAAAGACCAGTGGTAGTGCCAAGATCAGTGAGCGGGCTGATTTCGTTGAGAGTGGTCAGAGCAGTATTTGCAGAGGGAGCACCAGTAGTGACGTGAGTGATGAGAGTACCTGCAGCAGCTTTAGTAGCAGCATTAACAAGCCTCACAAGGCTAATGATTTGAGATGGGAAGCCATCCAAGCTGTTCGAGCTAGAGATGGGGTACTGGGTTTAGCTCACTTTCGGCTACTGAAGAGGTTGGGTTGTGGAGATATTGGTAGTGTATATCTCTCCGAATTGAGTGGAACTAAATGTTATTTTGCAATGAAGGTAATGGACAAAGGGTCCCTAGCTAGTCGCAAGAAGCTACTTCGGGCACAGACAGAAAGAGAAATACTGCAGTCCCTGGACCACCCCTTCCTTCCAACTTTGTATACCCATTTTGAGACAGAGAAGTTCTCATGCTTGGTTATGGAATTCTGCCCAGGTGGGGACTTGCATACTCTCAGACAGAGGCAACCGGGGAAGCATTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCGGAGGTACTGCTTGCTTTGGAGTACCTCCACATGCTTGGGATTGTCTACCGTGATCTCAAGCCTGAAAATGTACTTGTTAGAGACGATGGACATATTATGCTCTCTGACTTTGACCTTTCCCTCCGGTGTGCTGTTAGTCCGACCCTTGTTAAAACCTCATCTACGGATTCTGAGCCTTTAAGAAAGAATCCGGTTTACTGTGTCCAGCCTGCTTGTATTGAGCCGCCATCCTGCATCCAGCCATCTTGTGTTGCTCCTACTACATGCTTTTCACCCCGACTCTTTTCTAGTAAGTCAAAGAAAGAAAGGAAACCCAAAACTGAAATTGGCAACCAAGTGAGTCCGTTACCCGAGCTCATTGCAGAGCCTACTGATGCTCGGTCCATGTCATTTGTCGGAACCCATGAATACTTGGCACCTGAGATTATTAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGAATCTTTCTGTACGAGCTGTTGTTTGGGAAAACTCCATTTAAGGGATCTGGAAACCGAGCTACGTTGTTTAATGTTGTAGGTCAGGCTTTGCGGTTTCCAGAAGCACCTGTTGTCAGTTTTGCGGCAAGGGATCTTATTAGGGGGTTGCTTGTAAAAGAGCCTCAGCACAGGCTTGCATATAAAAGAGGGGCTACTGAGATTAAGCAGCATCCCTTTTTTGAAGGTGTGAATTGGGCACTGATCCGGTGCGCTACCCCACCAGAGATCCCGAAGCCGGTAGAGTTTGACAAGATACCTTCCCCAGCTTCATCAGCCGGTGGAAAGGCTGTTCAACATAAGTCAATACCTGATCAGAAAGGTTCTGACAATTACCTTGAGTTTGATTTCTTCTAG	1842	0.462	MDSKTSTRAPPKHHQKVAGIQTIETKETKPSPLQILKTGKSELAAPEELARPVQNTSKQNIGETSENKTLGISNQKGSADSLSNKCASGPSSSSLPVLDQASGVEHANRGPQESSIDQEKKTSEYGSVKNNSFSAKFSDRASSLAKTSGSAKISERADFVESGQSSICRGSTSSDVSDESTCSSFSSSINKPHKANDLRWEAIQAVRARDGVLGLAHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSTDSEPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKERKPKTEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQALRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEFDKIPSPASSAGGKAVQHKSIPDQKGSDNYLEFDFF*	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g2938	613	Pfam	Protein kinase domain	219	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod05g2938	613	Pfam	Protein kinase domain	453	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod05g2938	613	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	339	351	IPR008271	GO:0004672\|GO:0006468
	Dod05g2938	613	MobiDBLite	consensus disorder prediction	583	605	-	-
	Dod05g2938	613	CDD	STKc_phototropin_like	217	580	-	-
	Dod05g2938	613	SMART	serkin_6	218	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod05g2938	613	PANTHER	SERINE/THREONINE KINASE FAMILY PROTEIN	3	613	-	-
	Dod05g2938	613	Gene3D	Phosphorylase Kinase; domain 1	216	301	-	-
	Dod05g2938	613	MobiDBLite	consensus disorder prediction	52	99	-	-
	Dod05g2938	613	Gene3D	Transferase(Phosphotransferase) domain 1	450	574	-	-
	Dod05g2938	613	Gene3D	Transferase(Phosphotransferase) domain 1	302	377	-	-
	Dod05g2938	613	MobiDBLite	consensus disorder prediction	21	35	-	-
	Dod05g2938	613	SUPERFAMILY	Protein kinase-like (PK-like)	195	580	IPR011009	-
	Dod05g2938	613	PANTHER	FLIPPASE KINASE 1-RELATED	3	613	-	-
	Dod05g2938	613	MobiDBLite	consensus disorder prediction	1	127	-	-
	Dod05g2938	613	ProSiteProfiles	Protein kinase domain profile.	218	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g2938	Dod-Chr5	55298392	55302386	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g2938	6	613	AGC Kinase Gene Family	AT5G47750	74.309	0.0	864

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Dod05g2938		Pkinase	1.5e-36	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g2938	K08286		-	gmx:100781600	1037.71